Issues

• add T5SBB action thingee

  analysis@nersc
  lbl-cbg/t5-commons#93 · Filter by author dsclassen opened on Oct 8, 2025
  

• Make config post-able

  lbl-cbg/t5-commons#90 · Filter by author ajtritt opened on Jul 17, 2025

• Remove any and all mentions and uses of tags in JAMO

  lbl-cbg/t5-commons#89 · Filter by author ajtritt opened on Jul 17, 2025

• Consistent use of identifiers and annotation

  lbl-cbg/t5-commons#81 · Filter by author ajtritt opened on Jun 17, 2025
  

• Support pre-selected protein in PRP by URL

  protein request portal
  lbl-cbg/t5-commons#72 · Filter by author rly opened on Jun 12, 2025
  4

  

• Fixes to the alphafold automation to get the results available in the genome browser

  jamojira therapeudics
  lbl-cbg/t5-commons#71 · Filter by author sspoon opened on May 21, 2025 · Y2/Q2 - Apr-Jun, 2025
  

• Get solubility script running as part of pre construct pipeline

  analysis@nersc
  lbl-cbg/t5-commons#69 · Filter by author sspoon opened on May 8, 2025
  1

  

• Populate Jira Assets with Virus and Targets from Genbank file

  lbl-cbg/t5-commons#68 · Filter by author sspoon opened on May 6, 2025 · Y2/Q2 - Apr-Jun, 2025
  4

  

• Incorporate protein sub-region script to tracks script

  lbl-cbg/t5-commons#66 · Filter by author yonglbl opened on May 2, 2025
  

• Generate tracks metadata files from script

  lbl-cbg/t5-commons#65 · Filter by author yonglbl opened on May 2, 2025
  

• Require Protein ID in targets data

  lbl-cbg/t5-commons#64 · Filter by author yonglbl opened on May 1, 2025
  

• Add "check workflow" step to Jira workflow manager

  analysis@nersct5common
  lbl-cbg/t5-commons#62 · Filter by author ajtritt opened on Apr 25, 2025 · Y2/Q2 - Apr-Jun, 2025
  

• Some notes on how we might "glue" t5-commons/JIRA and BilboMD together

  analysis@nersc
  lbl-cbg/t5-commons#61 · Filter by author dsclassen opened on Apr 24, 2025
  1

• Tagging people in Jira comment results in email that cannot be replied to

  protein request portal
  lbl-cbg/t5-commons#60 · Filter by author rly opened on Apr 24, 2025
  1

  

• Jira PRP emails to approvers contain placeholders

  protein request portal
  lbl-cbg/t5-commons#59 · Filter by author rly opened on Apr 23, 2025
  4

  

• Identify which SEC-SAXS analysis pipelines we want to automate

  analysis@nersc
  lbl-cbg/t5-commons#58 · Filter by author sspoon opened on Apr 21, 2025 · Y2/Q2 - Apr-Jun, 2025
  1

  

• Automate PDB blast of proteins in a new genome

  analysis@nerscgenome browser
  lbl-cbg/t5-commons#57 · Filter by author ajtritt opened on Mar 26, 2025 · Y2/Q2 - Apr-Jun, 2025
  

• Get SAXS data into JAMO for automated data analysis

  jamo
  lbl-cbg/t5-commons#56 · Filter by author sspoon opened on Mar 24, 2025 · Y2/Q2 - Apr-Jun, 2025
  3

  

• Create a Jira form for the PRP for asking whether a protein is available or can be made

  protein request portal
  Task

  lbl-cbg/t5-commons#53 · Filter by author rly opened on Mar 4, 2025
  9

  

• Draft Jira workflow and boards for MedChem team

  medicinal chemistry
  Task

  lbl-cbg/t5-commons#51 · Filter by author rly opened on Mar 3, 2025
  

• Add support for Microsoft OAuth sign-in to JAMO

  jamo
  lbl-cbg/t5-commons#50 · Filter by author ajtritt opened on Mar 3, 2025
  

• Add upload form to JAMO UI

  jamo
  Feature

  lbl-cbg/t5-commons#49 · Filter by author ajtritt opened on Mar 3, 2025
  

• Create JAT template for assays

  jamomedicinal chemistry
  Task

  lbl-cbg/t5-commons#48 · Filter by author ajtritt opened on Mar 3, 2025
  1

  

• Create JAT template for CryoEM data

  jamo
  Task

  lbl-cbg/t5-commons#47 · Filter by author ajtritt opened on Mar 3, 2025

• Update Jira issue after MedChem assay results are uploaded to JAMO

  medicinal chemistry
  Task

  lbl-cbg/t5-commons#46 · Filter by author rly opened on Mar 3, 2025