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26 Open 49 Closed
26 Open 49 Closed
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Issues list

Intermittent Pyfastx Errors (corrupted size vs. prev_size, free(): invalid next size (fast))
#88 opened Mar 17, 2025 by JeanMainguy
1
close for Fasta object
#87 opened Feb 4, 2025 by diekhans
2
Support of Python 3.12/3.13 is suggested by badges in README, but not mentioned in README explicitly
#86 opened Jan 30, 2025 by corneliusroemer
1
TypeError: object of type 'Fastx' has no len()
#84 opened Oct 26, 2024 by josephrich98
9
How to read two fastq files simultaneously?
#82 opened Aug 9, 2024 by yc-pro
1
Segmentation Fault (Core dumped)
#81 opened Jul 26, 2024 by casparbein
2
Fetch function can't identify numpy int
#79 opened Apr 11, 2024 by Yuan2yuan2yuan
1
read.seq end with read.name when using pyfastx.Fastq in parsing long read FASTQ file
#78 opened Feb 25, 2024 by QYanwei
4
Sequence compostion
#77 opened Feb 4, 2024 by kullrich
2
Building/installing pyfastx from source is not possible due to zlib upgrade
#73 opened Oct 16, 2023 by aroon-color
Full Fasta info object without index building
#72 opened Sep 19, 2023 by oschwengers
1
How to get antisense sequence from any strings ?
#69 opened Aug 9, 2023 by galaxy001
1
Segmentation fault using .composition on each contig
#67 opened Jun 28, 2023 by nextgenusfs
2
SystemError: <class 'Fasta'> returned a result with an error set; on loading gzipped fasta
#63 opened Mar 22, 2023 by jolo2486
2
Unable to index gzipped fasta file by name: KeyError: 'chrY does not exist in fasta file'
#62 opened Mar 22, 2023 by jolo2486
2
Import Error
#60 opened Feb 27, 2023 by jpizzollo
3
[Feature Request] Get barcodes from Fastx function
#59 opened Feb 2, 2023 by hotsoupisgood
1
[Feature Request] Read from stdin option
#48 opened Sep 2, 2022 by jolespin
3
Support xz-compressed files
#46 opened Aug 24, 2022 by joverlee521
2
streaming multiple fastq files at the same time?
#42 opened Apr 28, 2022 by Irenexzwen
1
some sequences are missing in pyfastx.Fasta object
#41 opened Mar 12, 2022 by dawnmy
4
why it append "phred" behind read.name
#38 opened Jan 3, 2022 by zhang570221322
1
Multiprocessing with apply_async does not work
#33 opened Jun 23, 2021 by sanjaysrikakulam
6
The sample function with option --sequential-read went wrong
#28 opened Dec 25, 2020 by YanCCscu
1
Filter fastq file (performance)
#22 opened Nov 29, 2020 by Maarten-vd-Sande
1
ProTip! What’s not been updated in a month: updated:<2025-02-25.