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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    Python 1.1k 364

  2. UNI UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 341 46

  3. TriPath TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    Python 92 6

  4. CONCH CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 274 21

  5. TANGLE TANGLE Public

    Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024

    Python 81 2

  6. PANTHER PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    Jupyter Notebook 93 11

Repositories

Showing 10 of 29 repositories
  • HEST Public

    HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024

    mahmoodlab/HEST’s past year of commit activity
    Python 155 12 5 1 Updated Nov 11, 2024
  • MADELEINE Public

    MADELEINE: multi-stain slide representation learning (ECCV'24)

    mahmoodlab/MADELEINE’s past year of commit activity
    Python 31 4 1 1 Updated Oct 15, 2024
  • TANGLE Public

    Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/TANGLE’s past year of commit activity
    Python 81 2 4 0 Updated Oct 15, 2024
  • TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    mahmoodlab/TriPath’s past year of commit activity
    Python 92 6 0 0 Updated Sep 16, 2024
  • PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/PANTHER’s past year of commit activity
    Jupyter Notebook 93 11 2 0 Updated Sep 16, 2024
  • MMP Public

    Multimodal prototyping for cancer survival prediction - ICML 2024

    mahmoodlab/MMP’s past year of commit activity
    Jupyter Notebook 55 7 1 0 Updated Sep 16, 2024
  • UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    mahmoodlab/UNI’s past year of commit activity
    Jupyter Notebook 341 46 14 1 Updated Sep 12, 2024
  • CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    mahmoodlab/CONCH’s past year of commit activity
    Python 274 21 4 1 Updated Aug 9, 2024
  • CLAM Public

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    mahmoodlab/CLAM’s past year of commit activity
    Python 1,124 GPL-3.0 364 9 5 Updated Jul 31, 2024
  • hest-website Public

    Jekyll website for HEST-1k

    mahmoodlab/hest-website’s past year of commit activity
    CSS 2 CC0-1.0 0 0 0 Updated May 31, 2024
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