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Merged
fgvieira merged 1 commit into from
Jun 27, 2025
Merged

Code format #39

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10 changes: 5 additions & 5 deletions Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -51,7 +51,7 @@ all: .activate_module

endif

.PHONY: .activate_module
.PHONY: .activate_module

.activate_module:
git submodule update --init --recursive
Expand All @@ -60,7 +60,7 @@ endif


#modied from htslib makefile
FLAGS = -O3
FLAGS = -O3
CPPFLAGS := $(filter-out -DNDEBUG,$(CPPFLAGS))
FLAGS2 = $(CPPFLAGS) $(FLAGS) $(LDFLAGS)

Expand Down Expand Up @@ -100,7 +100,7 @@ version.h:

.PHONY: all clean install install-all install-misc misc test

misc:
misc:
$(MAKE) -C misc HTSSRC="$(realpath $(HTSSRC))"

-include $(OBJ:.o=.d)
Expand All @@ -121,15 +121,15 @@ metaDMG-cpp: version.h $(OBJ)
testclean:
rm -f test/acc2taxid.map.gzf570b1db7c.dedup.filtered.rname.bam.bin
rm -f test/data/f570b1db7c.dedup.filtered.rname.bam
rm -rf test/output test/logfile version.h
rm -rf test/output test/logfile version.h

clean: testclean
rm -f *.o *.d $(PROGRAMS) version.h *~
$(MAKE) -C misc clean

test:
echo "Running unit tests for metaDMG"
cd test;./testAll.sh
cd test;./testAll.sh

force:

Expand Down