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Fixed limitation of length of sequence, updated readlength distribution to jagged array#53

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ANGSD merged 10 commits into
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update_rlens
Apr 18, 2026
Merged

Fixed limitation of length of sequence, updated readlength distribution to jagged array#53
ANGSD merged 10 commits into
masterfrom
update_rlens

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@ANGSD

@ANGSD ANGSD commented Apr 18, 2026

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Previously it was not possible to have seqeuence length longer than 500. There should not be any limitation anymore
The program also generates the sequence length distribution for taxid/ref or global. This was previously a matrix of dim ntax x 500 with many zeroes. The program now generates output in the format

taxid rlength:count readlength:count
or
taxiid readlength count
taxid readlength count

This should be easier to parse

@ANGSD
ANGSD merged commit 072da36 into master Apr 18, 2026
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@ANGSD
ANGSD deleted the update_rlens branch April 18, 2026 23:45
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