Remove assert statements and general cleanup#54

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ANGSD merged 21 commits into

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remove_assert_statements

Apr 19, 2026

Commits on Apr 19, 2026

Removed asserts from dfit_helppage.cpp and dfit_optim.cpp
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removed assserts from main_aggregate.cpp
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removed assserts from metaDMG.cpp
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the bfgs.cpp warnings was very annoying these have been supressed now
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removed the asserts in mrand.cpp and ngsLCA.cpp
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Removed asserts from ngsLCA_cli.cpp
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Removed asserts in profile.cpp
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removed asserts from shared.cpp
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Removed asserts from shared.cpp other minor cleanup to get rid of warnings
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Removed asserts from misc/MAP.cpp and misc/compressbam.cpp
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removed assert in dfit_optim.cpp
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removed asserts from extract_reads
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cleaned up main_pmd.cpp
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cleaned up compile warnings in the standalone dfit optim part
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More cleanup in M3Load.cpp and files that had dependencies to this
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minor cleanup in misc/Likelihood.cpp and shared.cpp
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cleanuped main_dfit.cpp
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Minor missing argument in a printf in main_aggregate_stat.cpp
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Removed to never used functions for merging data, if relevante they will be readded. redid one of the printfunctions
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cleaned up mrand.cpp to avoid compiler warnings
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more cleanup mainly checking that fprintf with char* is not null and another subtle string concatenation
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Remove assert statements and general cleanup#54

Remove assert statements and general cleanup#54
ANGSD merged 21 commits into
masterfrom
remove_assert_statements

Commits on Apr 19, 2026

Removed asserts from dfit_helppage.cpp and dfit_optim.cpp

removed assserts from main_aggregate.cpp

removed assserts from metaDMG.cpp

the bfgs.cpp warnings was very annoying these have been supressed now

removed the asserts in mrand.cpp and ngsLCA.cpp

Removed asserts from ngsLCA_cli.cpp

Removed asserts in profile.cpp

removed asserts from shared.cpp

Removed asserts from shared.cpp other minor cleanup to get rid of warnings

Removed asserts from misc/MAP.cpp and misc/compressbam.cpp

removed assert in dfit_optim.cpp

removed asserts from extract_reads

cleaned up main_pmd.cpp

cleaned up compile warnings in the standalone dfit optim part

More cleanup in M3Load.cpp and files that had dependencies to this

minor cleanup in misc/Likelihood.cpp and shared.cpp

cleanuped main_dfit.cpp

Minor missing argument in a printf in main_aggregate_stat.cpp

Removed to never used functions for merging data, if relevante they will be readded. redid one of the printfunctions

cleaned up mrand.cpp to avoid compiler warnings

more cleanup mainly checking that fprintf with char* is not null and another subtle string concatenation