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metagentools

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  1. GraphBin Public

    ✨🧬 Refined binning of metagenomic contigs using assembly graphs

    Python 91 7

  2. MetaCoAG Public

    🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

    Python 62 7

  3. GraphBin2 Public

    ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

    Python 33 3

  4. VStrains Public

    VStrains is a de novo approach for reconstructing strains from viral quasispecies.

    Python 23 6

  5. metagenomic_binning_review Public

    Code used to analyse and plot metadata of metagenomic binning tools

    Jupyter Notebook 13 1

  6. gbintk Public

    🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit

    Python 8 5

Repositories

Showing 8 of 8 repositories
  • GraphBin Public

    ✨🧬 Refined binning of metagenomic contigs using assembly graphs

    Python 91 BSD-3-Clause 7 5 1 Updated Mar 6, 2025
  • GraphBin2 Public

    ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

    Python 33 BSD-3-Clause 3 7 1 Updated Mar 6, 2025
  • VStrains Public

    VStrains is a de novo approach for reconstructing strains from viral quasispecies.

    Python 23 MIT 6 1 0 Updated Feb 5, 2025
  • gbintk Public

    🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit

    Python 8 GPL-3.0 5 3 0 Updated Oct 2, 2024
  • MetaCoAG Public

    🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

    Python 62 GPL-3.0 7 12 0 Updated Sep 26, 2024
  • metagenomic_binning_review Public

    Code used to analyse and plot metadata of metagenomic binning tools

    Jupyter Notebook 13 MIT 1 0 0 Updated Aug 22, 2024
  • ConDiGA Public

    🗂️🧬 Contigs directed gene annotation for accurate protein sequence database construction in metaproteomics

    Python 6 MIT 2 2 0 Updated Jul 7, 2024
  • metagenomic-database-utilities Public

    Scripts used to create metagenomic databases for metaproteomic analysis

    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Feb 6, 2024