This branch is 67 commits ahead of bio2rdf/bio2rdf-scripts:master.

Name	Name	Last commit message	Last commit date
Latest commit micheldumontier fixed dataset uri in bioportal Mar 16, 2021 3fa8d1f · Mar 16, 2021 History 2,013 Commits
.github/workflows	.github/workflows	Update run-bio2rdf-scripts-bioportal.yml	Feb 4, 2021
affymetrix	affymetrix	update	Nov 24, 2015
biomodels	biomodels	fixed change in remote download location	Sep 11, 2013
bioportal	bioportal	fixed dataset uri in bioportal	Mar 16, 2021
chembl	chembl	fixed merge error	Oct 29, 2018
clinicaltrials	clinicaltrials	Update clinicaltrials.php	Jan 25, 2021
common	common	Revert "removing old folder"	Jan 14, 2021
ctd	ctd	Update ctd.php	Jan 15, 2021
dailymed	dailymed	dailymed update	Jan 15, 2021
dbpedia	dbpedia	adding minor changes	Apr 19, 2012
dbsnp	dbsnp	fixed dbsnp query bug	Dec 1, 2015
drugbank	drugbank	Update drugbank.php	Feb 2, 2021
genage	genage	updated genage parser	Nov 30, 2015
genbank	genbank	added describe individual to reference section	Aug 15, 2013
gendr	gendr	removed automatic processing of gendr gene expression data, which req…	Dec 1, 2015
goa	goa	Update goa.php	Jan 25, 2021
hgnc	hgnc	revised gene family related triples	Dec 23, 2020
homologene	homologene	fixed output file name	Aug 13, 2014
interpro	interpro	remove verbose per entry processing updates	Jan 19, 2021
ipi	ipi	removed old parsers	Aug 23, 2013
iproclass	iproclass	added counter	Nov 12, 2014
irefindex	irefindex	Update irefindex.php	Feb 5, 2021
kegg	kegg	Update kegg.php	Jan 25, 2021
linkedSPLs	linkedSPLs	update linkedSPLs done	Aug 7, 2017
lsr	lsr	Update lsr.php	Jan 14, 2021
mesh	mesh	changes to download urls; fixes to record processor	Jun 2, 2020
mgi	mgi	Update mgi.php	Jan 14, 2021
miriam	miriam	resolved merge conflict	Jun 30, 2020
ncbigene	ncbigene	Update ncbigene.php	Jan 23, 2021
ndc	ndc	updated download file location	Jun 1, 2020
omim	omim	fixed type error in omim	Mar 16, 2021
orphanet	orphanet	Update orphanet.php	Feb 3, 2021
pathwaycommons	pathwaycommons	Finished updating pathwaycommons to release 3	Aug 12, 2013
pdb	pdb	Bump junit from 4.7 to 4.13.1 in /pdb	Oct 13, 2020
pharmgkb	pharmgkb	update pharmgkb script	Jan 19, 2021
pubchem	pubchem	2 updates to CTD, NCBI Gene, PubChem, PubMed, SABIO-RK and SGD script…	Aug 8, 2013
pubmed	pubmed	Update pubmed.php	Feb 5, 2021
refseq	refseq	ignore the http links	Jan 19, 2016
sabiork	sabiork	fixed bug in local file location	Jun 5, 2014
sgd	sgd	fixes	Jan 22, 2021
sider	sider	fixed the namespace declaration for meddra concept -it's actually a u…	Oct 14, 2015
statistics	statistics	Merge branch 'release3' of github.com:micheldumontier/bio2rdf-scripts…	Aug 13, 2015
taxonomy	taxonomy	Update taxonomy.php	Dec 26, 2020
toxkb	toxkb	forgot to commit change of pubchem to pubchem_compound namespace	Aug 8, 2012
uniprot	uniprot	updated: requires a destination folder as a parameter for the download	Sep 27, 2013
unists	unists	added new r3 parser	Aug 15, 2013
wormbase	wormbase	Update wormbase.php	Jan 14, 2021
.gitignore	.gitignore	Add data/ folder to .gitignore	Jan 12, 2021
.gitmodules	.gitmodules	remove submodule	Jan 12, 2021
MIT-LICENSE.txt	MIT-LICENSE.txt	Update MIT-LICENSE.txt	Jan 24, 2014
README.md	README.md	update readme file to remove submodule docs	Jan 12, 2021
composer.json	composer.json	update to composer	Jun 30, 2020
runparser.php	runparser.php	removed redundant parameter	Sep 16, 2015

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Bio2RDF-scripts

This Git repository holds all of the RDF converter scripts used to generate Bio2RDF linked data.

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Licensed under MIT License, see license page for details.

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