gene_ref_parser #333
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gene_ref_parser #333
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… associated change in the spark.py utils package to allow connection to the PostgreSQL database. Use of gene_ref_parser.py requires the revised impc-airflow docker containers that provide the JDBC org.postgresql.Driver jar.
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requested changes
Jul 4, 2025
3 tasks
…e java JDBC postgresql driver from maven.
…ath and named the input asset clearly.
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This branch contains the migration of the gene_ref_executor to gene_ref_parser for Airflow, and modification to the utils/spark.py file to add the JDBC org.postgresql.Driver jar to the SparkSession for the gene_ref_parser DAG.