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Data Sources
Federico López Gómez edited this page Mar 9, 2020
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Expand dataframe Schema
root
|-- _VALUE: string (nullable = true)
|-- _procedureID: string (nullable = true)
|-- mediaParameter: array (nullable = true)
| |-- element: struct (containsNull = true)
| | |-- _URI: string (nullable = true)
| | |-- _VALUE: string (nullable = true)
| | |-- _fileType: string (nullable = true)
| | |-- _parameterID: string (nullable = true)
| | |-- parameterStatus: string (nullable = true)
|-- ontologyParameter: array (nullable = true)
| |-- element: struct (containsNull = true)
| | |-- _parameterID: string (nullable = true)
| | |-- _sequenceID: long (nullable = true)
| | |-- parameterStatus: string (nullable = true)
| | |-- term: array (nullable = true)
| | | |-- element: string (containsNull = true)
|-- procedureMetadata: array (nullable = true)
| |-- element: struct (containsNull = true)
| | |-- _VALUE: string (nullable = true)
| | |-- _parameterID: string (nullable = true)
| | |-- parameterStatus: string (nullable = true)
| | |-- value: string (nullable = true)
|-- seriesMediaParameter: array (nullable = true)
| |-- element: struct (containsNull = true)
| | |-- _VALUE: string (nullable = true)
| | |-- _parameterID: string (nullable = true)
| | |-- parameterStatus: string (nullable = true)
| | |-- value: array (nullable = true)
| | | |-- element: struct (containsNull = true)
| | | | |-- _URI: string (nullable = true)
| | | | |-- _VALUE: string (nullable = true)
| | | | |-- _fileType: string (nullable = true)
| | | | |-- _incrementValue: string (nullable = true)
| | | | |-- _link: string (nullable = true)
| | | | |-- parameterAssociation: array (nullable = true)
| | | | | |-- element: struct (containsNull = true)
| | | | | | |-- _Hjid: long (nullable = true)
| | | | | | |-- _VALUE: string (nullable = true)
| | | | | | |-- _parameterID: string (nullable = true)
| | | | | | |-- _sequenceID: long (nullable = true)
| | | | |-- procedureMetadata: struct (nullable = true)
| | | | | |-- _parameterID: string (nullable = true)
| | | | | |-- value: double (nullable = true)
|-- seriesParameter: array (nullable = true)
| |-- element: struct (containsNull = true)
| | |-- _VALUE: string (nullable = true)
| | |-- _parameterID: string (nullable = true)
| | |-- _unit: string (nullable = true)
| | |-- parameterStatus: string (nullable = true)
| | |-- value: array (nullable = true)
| | | |-- element: struct (containsNull = true)
| | | | |-- _VALUE: string (nullable = true)
| | | | |-- _incrementStatus: string (nullable = true)
| | | | |-- _incrementValue: string (nullable = true)
|-- simpleParameter: array (nullable = true)
| |-- element: struct (containsNull = true)
| | |-- _parameterID: string (nullable = true)
| | |-- _sequenceID: long (nullable = true)
| | |-- _unit: string (nullable = true)
| | |-- parameterStatus: string (nullable = true)
| | |-- value: string (nullable = true)
|-- _dateOfExperiment: string (nullable = true)
|-- _experimentID: string (nullable = true)
|-- _sequenceID: string (nullable = true)
|-- specimenID: string (nullable = true)
|-- statusCode: array (nullable = true)
| |-- element: struct (containsNull = true)
| | |-- _VALUE: string (nullable = true)
| | |-- _date: string (nullable = true)
|-- _centreID: string (nullable = true)
|-- _pipeline: string (nullable = true)
|-- _project: string (nullable = true)
|-- _sourceFile: string (nullable = true)
|-- _dataSource: string (nullable = true)
|-- _type: string (nullable = true)
Expand dataframe Schema
root
|-- _DOB: string (nullable = true)
|-- _colonyID: string (nullable = true)
|-- _corrupt_record: string (nullable = true)
|-- _gender: string (nullable = true)
|-- _isBaseline: boolean (nullable = true)
|-- _litterId: string (nullable = true)
|-- _phenotypingCentre: string (nullable = true)
|-- _pipeline: string (nullable = true)
|-- _productionCentre: string (nullable = true)
|-- _project: string (nullable = true)
|-- _specimenID: string (nullable = true)
|-- _strainID: string (nullable = true)
|-- _zygosity: string (nullable = true)
|-- genotype: struct (nullable = true)
| |-- _MGIAlleleId: string (nullable = true)
| |-- _MGIGeneId: string (nullable = true)
| |-- _VALUE: string (nullable = true)
| |-- _fatherZygosity: string (nullable = true)
| |-- _geneSymbol: string (nullable = true)
| |-- _motherZygosity: string (nullable = true)
|-- relatedSpecimen: array (nullable = true)
| |-- element: struct (containsNull = true)
| | |-- _VALUE: string (nullable = true)
| | |-- _relationship: string (nullable = true)
| | |-- _specimenID: string (nullable = true)
|-- type: string (nullable = false)
|-- _stage: string (nullable = true)
|-- _stageUnit: string (nullable = true)
Expand dataframe Schema
root
|-- centreName: string (nullable = true)
|-- description: string (nullable = true)
|-- impc: long (nullable = true)
|-- isActive: boolean (nullable = true)
|-- isDeleted: boolean (nullable = true)
|-- isDeprecated: boolean (nullable = true)
|-- isInternal: boolean (nullable = true)
|-- isVisible: boolean (nullable = true)
|-- majorVersion: long (nullable = true)
|-- minorVersion: long (nullable = true)
|-- name: string (nullable = true)
|-- pipelineId: long (nullable = true)
|-- pipelineKey: string (nullable = true)
|-- pipelineType: string (nullable = true)
|-- scheduleCollection: array (nullable = true)
| |-- element: long (containsNull = true)
|-- weight: long (nullable = true)
|-- scheduleId: long (nullable = true)
|-- schedule: struct (nullable = true)
| |-- isActive: boolean (nullable = true)
| |-- isDeprecated: boolean (nullable = true)
| |-- pipelineId: long (nullable = true)
| |-- procedureCollection: array (nullable = true)
| | |-- element: long (containsNull = true)
| |-- scheduleId: long (nullable = true)
| |-- stage: string (nullable = true)
| |-- time: string (nullable = true)
| |-- timeLabel: string (nullable = true)
| |-- timeUnit: string (nullable = true)
|-- procedureId: long (nullable = true)
|-- procedure: struct (nullable = true)
| |-- description: string (nullable = true)
| |-- isInternal: boolean (nullable = true)
| |-- isMandatory: boolean (nullable = true)
| |-- isVisible: boolean (nullable = true)
| |-- level: string (nullable = true)
| |-- majorVersion: long (nullable = true)
| |-- minAnimals: long (nullable = true)
| |-- minFemales: long (nullable = true)
| |-- minMales: long (nullable = true)
| |-- minorVersion: long (nullable = true)
| |-- name: string (nullable = true)
| |-- oldProcedureKey: string (nullable = true)
| |-- parameterCollection: array (nullable = true)
| | |-- element: long (containsNull = true)
| |-- procedureId: long (nullable = true)
| |-- procedureKey: string (nullable = true)
| |-- scheduleId: long (nullable = true)
| |-- type: long (nullable = true)
|-- parameterId: long (nullable = true)
|-- parameter: struct (nullable = true)
| |-- dataAnalysisNotes: string (nullable = true)
| |-- derivation: string (nullable = true)
| |-- description: string (nullable = true)
| |-- graphType: string (nullable = true)
| |-- incrementCollection: array (nullable = true)
| | |-- element: string (containsNull = true)
| |-- isActive: boolean (nullable = true)
| |-- isAnnotation: boolean (nullable = true)
| |-- isDeleted: boolean (nullable = true)
| |-- isDeprecated: boolean (nullable = true)
| |-- isDerived: boolean (nullable = true)
| |-- isImportant: boolean (nullable = true)
| |-- isIncrement: boolean (nullable = true)
| |-- isInternal: boolean (nullable = true)
| |-- isMedia: boolean (nullable = true)
| |-- isOption: boolean (nullable = true)
| |-- isRequired: boolean (nullable = true)
| |-- isVisible: boolean (nullable = true)
| |-- majorVersion: long (nullable = true)
| |-- minorVersion: long (nullable = true)
| |-- name: string (nullable = true)
| |-- oldParameterKey: string (nullable = true)
| |-- ontologyGroupId: string (nullable = true)
| |-- optionCollection: array (nullable = true)
| | |-- element: string (containsNull = true)
| |-- originalParamId: long (nullable = true)
| |-- parameterId: long (nullable = true)
| |-- parameterKey: string (nullable = true)
| |-- parammptermCollection: array (nullable = true)
| | |-- element: long (containsNull = true)
| |-- procedureId: long (nullable = true)
| |-- qcCheck: boolean (nullable = true)
| |-- qcMax: string (nullable = true)
| |-- qcMin: string (nullable = true)
| |-- qcNotes: string (nullable = true)
| |-- type: string (nullable = true)
| |-- unit: long (nullable = true)
| |-- valueType: string (nullable = true)
| |-- weight: long (nullable = true)
|-- incrementId: string (nullable = true)
|-- increment: struct (nullable = true)
| |-- incrementId: string (nullable = true)
| |-- incrementMin: string (nullable = true)
| |-- incrementString: string (nullable = true)
| |-- incrementType: string (nullable = true)
| |-- incrementUnit: string (nullable = true)
| |-- isActive: boolean (nullable = true)
| |-- isDeleted: boolean (nullable = true)
| |-- originalId: string (nullable = true)
| |-- parameterId: string (nullable = true)
| |-- weight: long (nullable = true)
|-- optionId: string (nullable = true)
|-- option: struct (nullable = true)
| |-- description: string (nullable = true)
| |-- isActive: boolean (nullable = true)
| |-- isDefault: boolean (nullable = true)
| |-- isDeleted: boolean (nullable = true)
| |-- name: string (nullable = true)
| |-- optionId: string (nullable = true)
| |-- parameterId: string (nullable = true)
| |-- parentId: string (nullable = true)
| |-- phoweight: long (nullable = true)
| |-- poweight: long (nullable = true)
|-- parammptermId: long (nullable = true)
|-- parammpterm: struct (nullable = true)
| |-- incrementId: string (nullable = true)
| |-- isDeleted: boolean (nullable = true)
| |-- ontologyTermId: string (nullable = true)
| |-- optionText: string (nullable = true)
| |-- paramMptermId: string (nullable = true)
| |-- parameterId: string (nullable = true)
| |-- selectionOutcome: string (nullable = true)
| |-- sex: string (nullable = true)
| |-- weight: long (nullable = true)
IMITS alleles report, available from
Expand dataframe Schema
root
|-- type: string (nullable = true)
|-- allele_design_project: string (nullable = true)
|-- marker_symbol: string (nullable = true)
|-- marker_mgi_accession_id: string (nullable = true)
|-- marker_type: string (nullable = true)
|-- marker_name: string (nullable = true)
|-- marker_synonym: string (nullable = true)
|-- human_gene_symbol: string (nullable = true)
|-- human_entrez_gene_id: string (nullable = true)
|-- human_homolo_gene_id: string (nullable = true)
|-- feature_type: string (nullable = true)
|-- feature_chromosome: string (nullable = true)
|-- feature_strand: string (nullable = true)
|-- feature_coord_start: string (nullable = true)
|-- feature_coord_end: string (nullable = true)
|-- genetic_map_links: string (nullable = true)
|-- sequence_map_links: string (nullable = true)
|-- gene_model_ids: string (nullable = true)
|-- allele_symbol: string (nullable = true)
|-- allele_name: string (nullable = true)
|-- allele_type: string (nullable = true)
|-- allele_subtype: string (nullable = true)
|-- allele_mgi_accession_id: string (nullable = true)
|-- mgi_accession_id: string (nullable = true)
|-- synonym: string (nullable = true)
|-- allele_symbol_search_variants: string (nullable = true)
|-- allele_description: string (nullable = true)
|-- full_allele_description: string (nullable = true)
|-- design_id: string (nullable = true)
|-- cassette: string (nullable = true)
|-- ikmc_project: string (nullable = true)
|-- pipeline: string (nullable = true)
|-- allele_features: string (nullable = true)
|-- without_allele_features: string (nullable = true)
|-- mutation_type: string (nullable = true)
|-- allele_category: string (nullable = true)
|-- targeting_vector_available: string (nullable = true)
|-- es_cell_available: string (nullable = true)
|-- mouse_available: string (nullable = true)
|-- genbank_file: string (nullable = true)
|-- allele_image: string (nullable = true)
|-- allele_simple_image: string (nullable = true)
|-- vector_genbank_file: string (nullable = true)
|-- vector_allele_image: string (nullable = true)
|-- sequence_files_urls: string (nullable = true)
|-- vcf_file_urls: string (nullable = true)
|-- bam_file_urls: string (nullable = true)
|-- genoverse_design_track_url: string (nullable = true)
|-- genoverse_mut_allele_track_url: string (nullable = true)
|-- genoverse_predicted_allele_track_url: string (nullable = true)
|-- links: string (nullable = true)
|-- es_cell_status: string (nullable = true)
|-- mouse_status: string (nullable = true)
|-- phenotype_status: string (nullable = true)
|-- late_adult_phenotype_status: string (nullable = true)
|-- conditional_mouse_status: string (nullable = true)
|-- deletion_mouse_status: string (nullable = true)
|-- disease_model_status: string (nullable = true)
|-- latest_es_cell_status: string (nullable = true)
|-- latest_mouse_status: string (nullable = true)
|-- latest_project_status_legacy: string (nullable = true)
|-- latest_project_status: string (nullable = true)
|-- latest_phenotype_status: string (nullable = true)
|-- production_centre: string (nullable = true)
|-- phenotyping_centre: string (nullable = true)
|-- production_centres: string (nullable = true)
|-- phenotyping_centres: string (nullable = true)
|-- late_adult_phenotyping_centre: string (nullable = true)
|-- late_adult_phenotyping_centres: string (nullable = true)
|-- latest_production_centre: string (nullable = true)
|-- latest_phenotyping_centre: string (nullable = true)
|-- latest_phenotype_started: string (nullable = true)
|-- latest_phenotype_complete: string (nullable = true)
|-- late_adult_phenotype_started: string (nullable = true)
|-- late_adult_phenotype_complete: string (nullable = true)
|-- tissues_available: string (nullable = true)
|-- tissue_types: string (nullable = true)
|-- tissue_enquiry_links: string (nullable = true)
|-- tissue_distribution_centres: string (nullable = true)
|-- notes: string (nullable = true)
Expand dataframe Schema
root
|-- allele_design_project: string (nullable = true)
|-- product_id: string (nullable = true)
|-- marker_symbol: string (nullable = true)
|-- marker_mgi_accession_id: string (nullable = true)
|-- mgi_accession_id: string (nullable = true)
|-- marker_type: string (nullable = true)
|-- marker_name: string (nullable = true)
|-- marker_synonym: string (nullable = true)
|-- allele_mgi_accession_id: string (nullable = true)
|-- allele_symbol: string (nullable = true)
|-- name: string (nullable = true)
|-- allele_type: string (nullable = true)
|-- allele_name: string (nullable = true)
|-- allele_has_issue: string (nullable = true)
|-- allele_id: string (nullable = true)
|-- type: string (nullable = true)
|-- allele_synonym: string (nullable = true)
|-- genetic_info: string (nullable = true)
|-- production_centre: string (nullable = true)
|-- production_pipeline: string (nullable = true)
|-- production_completed: string (nullable = true)
|-- production_info: string (nullable = true)
|-- status: string (nullable = true)
|-- status_date: string (nullable = true)
|-- qc_data: string (nullable = true)
|-- associated_product_colony_name: string (nullable = true)
|-- associated_product_es_cell_name: string (nullable = true)
|-- associated_product_vector_name: string (nullable = true)
|-- associated_products_colony_names: string (nullable = true)
|-- associated_products_es_cell_names: string (nullable = true)
|-- associated_products_vector_names: string (nullable = true)
|-- order_names: string (nullable = true)
|-- order_links: string (nullable = true)
|-- contact_names: string (nullable = true)
|-- contact_links: string (nullable = true)
|-- other_links: string (nullable = true)
|-- loa_assays: string (nullable = true)
|-- ikmc_project_id: string (nullable = true)
|-- design_id: string (nullable = true)
|-- cassette: string (nullable = true)