Package to merge multiple pair of pair-end fastq data
- Free software: Apache Software License 2.0
- Documentation: https://merge-fastq.readthedocs.io.
- Given multiple pair-end fastq data merge them into single pair-end fastq w.r.t each READ1 and READ2
> merge_fastq --help
Usage: merge_fastq [OPTIONS]
Console script for merge_fastq.
- Options:
-fp1, --fastq1 PATH Full path to gziped READ1 fastq files, can be specified multiple times for example: --fastq1 test_part1_R1.fastq.gz --fastq1 test_part2_R1.fastq.gz [required] -fp2, --fastq2 PATH Full path to gziped READ2 fastq files, can be specified multiple times for example: --fastq2 test_part1_R2.fastq.gz --fastq2 test_part2_R2.fastq.gz [required] -op, --output-path PATH Full path to write the output files (default: Current working directory) -of1, --out-fastq1 TEXT Name of the merged output READ1 fastq file (default: merged_fastq_R1.fastq.gz) -of2, --out-fastq2 TEXT Name of the merged output READ2 fastq file (default: merged_fastq_R2.fastq.gz) --help Show this message and exit.
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