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<h1 >Medizintechnik II – Exercises</h1>
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<h1 class="title" itemprop="headline">Checklist – Project Report</h1>
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<span itemprop="name">Stephan Seitz</span>
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<p>We've collected a small checklist for things that you might forget when writing your project work.
For a detailed description on how to write the report, refer to the exercise slides.
The project report can be in English or German.</p>
<p>To achieve full 10 points for writing style...</p>
<ul>
<li>Use the <strong>templates</strong> we provide to you. Do not modify the style or the formatting. No ornaments for page numbers!</li>
<li>Use <strong>scientific references</strong> to prove your explanantions and to clearly separate your work from the work of others.</li>
<li>Do not use more than two references that are <strong>websites</strong> only. If you have to cite a website use the recommended style from
the exercise slides.</li>
<li>Create a <strong>bibliography</strong>. Follow the advises from the exercise slides.
The bibliography must be sorted (either alphabetically when using the Name/Year citation style or
by the order you use them in the text when numbering the sources).
Use the same citation style for all your references.</li>
<li>Do <strong>not use footnotes</strong>!</li>
<li>Check your <strong>spelling</strong>: there shouldn't be any obvious spelling errors that can be detected by Word.</li>
<li>All <strong>symbols in equations</strong> should be explained in the text.</li>
<li>All <strong>equations, figures and tables</strong> (tables probably not needed) should be <strong>numbered and referenced</strong> in the text.</li>
<li>All your figures should look professional.
They should not be blurry or hand-drawn and images should not have a window border of ImageJ.
They should not overlap with the text.</li>
<li>All figures should have <strong>captions</strong> giving a brief description what the figure shows. The caption should be below the figure.</li>
<li>All <strong>figures should be full-width</strong>, not next text. A figure can contain multiple images next to each other.</li>
<li>A list of figures is not needed.</li>
<li>Do not use <strong>abbreviation</strong> without introducing them. The first time you should write <em>computer tomography (CT)</em>.
After that, <em>CT</em> is enough.</li>
<li><strong>Label all axes</strong> in all plots and coordinate systems!</li>
<li>Never use &quot;Ich&quot; or &quot;I&quot;. In English texts it's acceptable to use &quot;we&quot; even though you did all the work alone.</li>
</ul>
<p>To obtain all the points for the content of your report</p>
<ul>
<li>Check whether you have addressed all the <strong>questions</strong> in the task description.</li>
<li>Check for <strong>numbers in the questions</strong>. Do you really have <strong>two</strong> advantages and <strong>two</strong> disadvanges of using computer tomography?</li>
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<span itemprop="name">Stephan Seitz</span>
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<p><a href="http://clearvolume.github.io/">ClearVolume</a> looks like this</p>
<p><img src="https://mt2-erlangen.github.io/archive/2020/clearvolume/clearvolume.png" alt="" /></p>
<p>You can integrate it into your development enviroment by adding this
line to your <code>gradle.build</code>.</p>
<pre data-lang="groovy" style="background-color:#2b303b;color:#c0c5ce;" class="language-groovy "><code class="language-groovy" data-lang="groovy"><span>implementation &#39;</span><span style="color:#a3be8c;">sc.fiji:imglib-clearvolume:1.4.2</span><span>&#39;
</span></code></pre>
<p>You need to start ImageJ with (instead of <code>(new ij.ImageJ()).exitWhenQuitting(true);</code>)</p>
<pre data-lang="java" style="background-color:#2b303b;color:#c0c5ce;" class="language-java "><code class="language-java" data-lang="java"><span> net.image.</span><span style="color:#ebcb8b;">ImageJ</span><span> ij = </span><span style="color:#b48ead;">new </span><span>net.imagej.</span><span style="color:#ebcb8b;">ImageJ</span><span>();
</span><span> ij.</span><span style="color:#bf616a;">launch</span><span>();
</span></code></pre>
<p>I guess, this only works if you are running Java 1.8 (at least on my Linux machines)!</p>
<p><img src="https://mt2-erlangen.github.io/archive/2020/clearvolume/clearvolume_menu.png" alt="" /></p>
<p>What will always work, is to install <a href="https://fiji.sc/">Fiji</a> and
activate <code>ClearVolume</code> under <em>Help &gt; Update... &gt; Manage update sites</em> and
select &quot;Clear Volume&quot;</p>
<p><img src="https://mt2-erlangen.github.io/archive/2020/clearvolume/fiji.png" alt="" /></p>
<p>Fiji also has many other PlugIns to view volumes.</p>
<p><a href="../volume">Back to volumes</a></p>

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