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@neuropoly

NeuroPoly

Ecole Polytechnique, Université de Montréal

Popular repositories Loading

  1. totalspineseg totalspineseg Public

    Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

    Python 51 2

  2. gmseg gmseg Public

    Spinal cord gray matter segmentation using deep dilated convolutions.

    Jupyter Notebook 45 8

  3. domainadaptation domainadaptation Public

    Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

    Python 43 9

  4. deep-active-learning deep-active-learning Public

    Implementation of active learning features for AxonDeepSeg software (axon-myelin segmentation)

    Jupyter Notebook 38 13

  5. gifmaker gifmaker Public

    Convert images to GIF animation.

    Python 20 3

  6. axonseg axonseg Public

    Segment axon and myelin from microscopy data. Written in Matlab.

    MATLAB 19 12

Repositories

Showing 10 of 59 repositories
  • modular_optuna_ml Public

    Modular framework for automating large-scale permutations of Optuna ML studies

    Python 2 0 16 (1 issue needs help) 3 Updated Apr 20, 2025
  • totalspineseg Public

    Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

    Python 51 LGPL-3.0 2 14 2 Updated Apr 17, 2025
  • intranet.neuro.polymtl.ca Public

    NeuroPoly's lab manual

    HTML 4 7 44 1 Updated Apr 11, 2025
  • neuro.polymtl.ca Public

    NeuroPoly's Website

    Python 3 7 26 3 Updated Apr 9, 2025
  • Susceptibility-Separation-Phantom Public

    This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.

    MATLAB 8 MIT 1 2 0 Updated Mar 24, 2025
  • bibeasy Public

    Set of tools to manage academic bibliography

    Python 2 Apache-2.0 0 17 1 Updated Jan 21, 2025
  • Python 4 MIT 1 45 (6 issues need help) 3 Updated Jan 15, 2025
  • distriploy Public

    Release & deployment helper

    Python 1 MIT 0 5 1 Updated Jan 9, 2025
  • coil-qa Public

    Python library to compute coil quality analysis metrics such as SNR, noise correlation matrix and g-factor maps.

    Python 1 MIT 0 4 0 Updated Nov 28, 2024
  • cortical-surface64mT Public

    Pipeline for generating the cortical surface from Hyperfine pediatric brain MRI

    Shell 0 Apache-2.0 0 0 0 Updated Nov 20, 2024