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Pull requests: nextflow-io/nextflow

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Pull requests list

Fix #6182: Add Google Batch LogsPolicy PATH option for GCS bucket log… executor/google-batch
#6431 opened Sep 26, 2025 by dglazer • Draft
1
Add directory traversal API to RepositoryProvider abstraction software/git
#6430 opened Sep 26, 2025 by pditommaso • Draft
3
enhance: Upgrade Claude Code hooks with advanced JSON reporting
#6429 opened Sep 25, 2025 by edmundmiller Loading…
@edmundmiller
2
Determine Azure directories more accurately using metadata and blob properties storage/azure
#6428 opened Sep 25, 2025 by adamrtalbot Loading…
1
6
Fix: tolerate spaces in $NXF_TASK_WORKDIR software/bash
#6421 opened Sep 23, 2025 by TheLostLambda Loading…
1
Fix SIGTERM forwarding in AWS Batch jobs executor/aws-batch software/bash
#6414 opened Sep 18, 2025 by jorgee Loading…
11
Fix false error with storeDir and val outputs
#6408 opened Sep 16, 2025 by bentsherman Loading…
1
3
Limit S3 concurrent downloads to fix Java Heap OOM
#6402 opened Sep 15, 2025 by jorgee Loading… 25.10
27
Simplify process entry execution
#6391 opened Sep 9, 2025 by bentsherman Loading…
1
New command group: nextflow auth
#6380 opened Sep 4, 2025 by ewels Loading…
@jorgee
11
Fix false error for executor.jobName config option lang/config
#6375 opened Sep 2, 2025 by bentsherman • Draft 25.10
1
2
Limit S3 client connections when using virtual threads storage/aws
#6369 opened Aug 28, 2025 by jorgee Loading… 25.10
1
22
Typed processes lang/processes
#6368 opened Aug 27, 2025 by bentsherman Loading…
3 tasks done
25.10
42
Support running nextflow script in cygwin software/bash
#6367 opened Aug 27, 2025 by markwoon Loading…
5
Generate plugin spec plugins
#6361 opened Aug 22, 2025 by bentsherman Loading… 25.10
17
Use Managed Identities with Azure to download and upload files executor/azure-batch
#6344 opened Aug 14, 2025 by adamrtalbot Loading…
1
Package directive
#6342 opened Aug 14, 2025 by edmundmiller • Draft
1
@edmundmiller
8
WIP: Capture all comments in parser
#6332 opened Aug 7, 2025 by ErikDanielsson • Draft
2
Add s3 checksum algorithm storage/aws
#6321 opened Jul 31, 2025 by jorgee • Draft 25.10
1
Use ECS properties instead of container properties executor/aws-batch
#6270 opened Jul 11, 2025 by jorgee Loading…
1
17
Prevent using Azure Low Priority VMs when using Batch Managed mode
#6267 opened Jul 10, 2025 by adamrtalbot • Draft
1
@adamrtalbot
5
Include support for git-remote-s3
#6260 opened Jul 9, 2025 by jorgee • Draft
3 of 5 tasks
4
Ignore secrets in stub run
#6256 opened Jul 7, 2025 by bentsherman • Draft
1
1
Add SQLite based cache store
#6255 opened Jul 6, 2025 by pditommaso • Draft
1
4
Improve AWS Batch spot reclamation error messages
#6253 opened Jul 4, 2025 by ewels Loading…
4 tasks
2
1
ProTip! Exclude everything labeled bug with -label:bug.