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Version bump - #99

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delfiterradas merged 8 commits into
nf-core:devfrom
delfiterradas:version_bump
Oct 6, 2026
Merged

Version bump#99
delfiterradas merged 8 commits into
nf-core:devfrom
delfiterradas:version_bump

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@delfiterradas

@delfiterradas delfiterradas commented Oct 6, 2026

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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/datasync branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@github-actions

github-actions Bot commented Oct 6, 2026 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 1204876

+| ✅ 207 tests passed       |+
#| ❔   5 tests were ignored |#
#| ❔   1 tests had warnings |#
!| ❗   3 tests had warnings |!
Details

❗ Test warnings:

❔ Tests ignored:

❔ Tests fixed:

✅ Tests passed:

Run details

  • nf-core/tools version 4.1.0
  • Run at 2026-10-06 14:35:35

@mashehu

mashehu commented Oct 6, 2026 •
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concerning the images, that linting test can be a bit flacky. I recommend to pull them from the TEMPLATE branch (git checkout TEMPLATE -- path/to/file) and see if linting passes then

@delfiterradas
delfiterradas marked this pull request as ready for review October 6, 2026 12:58
@delfiterradas
delfiterradas requested a review from mashehu October 6, 2026 13:00
@delfiterradas
delfiterradas requested a review from atrigila October 6, 2026 14:37
atrigila
atrigila approved these changes Oct 6, 2026
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@atrigila atrigila left a comment

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I think this is OK. Thank you for addressing Matthias' comments.

@delfiterradas
delfiterradas merged commit 9c87e93 into nf-core:dev Oct 6, 2026
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@atrigila atrigila atrigila approved these changes
@mashehu mashehu Awaiting requested review from mashehu

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@delfiterradas @mashehu @atrigila