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Adressing review suggestions for Version 1.0.0 #9

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Adressing review suggestions for Version 1.0.0 #9

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Commits on Aug 7, 2024

  1. Implemented minor reviewer requests

    @Felix-Kummer
    Felix-Kummer committed Aug 7, 2024
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Commits on Aug 8, 2024

  1. Added parameters to control publishing behavior for intermediate proc… 

    …essing results, some minor adjustments in the docs.
    @Felix-Kummer
    Felix-Kummer committed Aug 8, 2024
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  2. Added descriptions to custom scripts.

    @Felix-Kummer
    Felix-Kummer committed Aug 8, 2024
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Commits on Aug 21, 2024

  1. Applied more minor changes requested by the reviewers

    @Felix-Kummer
    Felix-Kummer committed Aug 21, 2024
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Commits on Aug 23, 2024

  1. Reworked merge scripts

    @Felix-Kummer
    Felix-Kummer committed Aug 23, 2024
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  2. Added authors and licenses to scripts

    @Felix-Kummer
    Felix-Kummer committed Aug 23, 2024
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  3. Removed unused sensors_level1 parameter

    @Felix-Kummer
    Felix-Kummer committed Aug 23, 2024
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Commits on Aug 28, 2024

  1. Applied one-sentence-per-line-scheme in .md files

    @Felix-Kummer
    Felix-Kummer committed Aug 28, 2024
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Commits on Aug 29, 2024

  1. Removed unnecessarily ignored parameters in test profile

    @Felix-Kummer
    Felix-Kummer committed Aug 29, 2024
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  2. Improved parameter references in docs

    @Felix-Kummer
    Felix-Kummer committed Aug 29, 2024
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Commits on Sep 6, 2024

  1. Replaced retry strategies with error_retry label

    @Felix-Kummer
    Felix-Kummer committed Sep 6, 2024
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Commits on Sep 18, 2024

  1. Adopted nf-core pseudo-standard directory structure for local modules

    @Felix-Kummer
    Felix-Kummer committed Sep 18, 2024
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  2. Updated nf-core untar module

    @Felix-Kummer
    Felix-Kummer committed Sep 18, 2024
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  3. Enriched schema with patterns for parameters

    @Felix-Kummer
    Felix-Kummer committed Sep 18, 2024
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  4. Improved output documentation for tss files

    @Felix-Kummer
    Felix-Kummer committed Sep 18, 2024
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  5. Added date format to date parameters

    @Felix-Kummer
    Felix-Kummer committed Sep 18, 2024
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  6. Removed deprecated docker parameter

    @Felix-Kummer
    Felix-Kummer committed Sep 18, 2024
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Commits on Sep 19, 2024

  1. Added tags to all modules

    @Felix-Kummer
    Felix-Kummer committed Sep 19, 2024
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Commits on Sep 26, 2024

  1. Removed restrictions on FORCE thread numbers and corresponding parameter

    @Felix-Kummer
    Felix-Kummer committed Sep 26, 2024
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  2. Replaced usage of params in modules and subworkflows with channels

    @Felix-Kummer
    Felix-Kummer committed Sep 26, 2024
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  3. Added more output channels to the top level workflow

    @Felix-Kummer
    Felix-Kummer committed Sep 26, 2024
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Commits on Sep 28, 2024

  1. Added automatic tarball extraction for input parameters

    @Felix-Kummer
    Felix-Kummer committed Sep 28, 2024
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Commits on Oct 7, 2024

  1. Changed UNTAR container to its default container image

    @Felix-Kummer
    Felix-Kummer committed Oct 7, 2024
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Commits on Oct 11, 2024

  1. Changed force-pyramid to process a single file instead of groups of f… 

    …iles
    @Felix-Kummer
    Felix-Kummer committed Oct 11, 2024
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Commits on Oct 14, 2024

  1. Merge branch 'nf-core:dev' into dev

    @Felix-Kummer
    Felix-Kummer authored Oct 14, 2024
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Commits on Oct 18, 2024

  1. Merge remote-tracking branch 'origin/dev' into dev

    @Felix-Kummer
    Felix-Kummer committed Oct 18, 2024
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Commits on Oct 25, 2024

  1. Updated input mimetype in schema

    @Felix-Kummer
    Felix-Kummer committed Oct 25, 2024
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  2. Added missing fields to schema

    @Felix-Kummer
    Felix-Kummer committed Oct 25, 2024
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  3. Updated changelog

    @Felix-Kummer
    Felix-Kummer committed Oct 25, 2024
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Commits on Oct 26, 2024

  1. Fixed some linter warnings

    @Felix-Kummer
    Felix-Kummer committed Oct 26, 2024
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Commits on Oct 28, 2024

  1. Replaced for-loops with GNU parallel

    @Felix-Kummer
    Felix-Kummer committed Oct 28, 2024
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Commits on Nov 9, 2024

  1. Migrated check result modules to nf-test

    @Felix-Kummer
    Felix-Kummer committed Nov 9, 2024
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Commits on Nov 11, 2024

  1. Added parameter to disable all output publishing

    @Felix-Kummer
    Felix-Kummer committed Nov 11, 2024
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Commits on Nov 13, 2024

  1. Fixed log output for preprocessing

    @Felix-Kummer
    Felix-Kummer committed Nov 13, 2024
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