Modules: adding test dataset for testing the hificnv module #1763
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…cnv module tesing, genome/pacbio/vcv/SCRI_KT5028_GRCh38_downsampled_on_chr22_pbmm2_snv_hiphased.vcf.gz.
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I would like to add the following dataset for the
hificnvmoduel tesing: (1)/data/genomics/homo_sapiens/pacbio/bam/SCRI_KT5028_GRCh38_downsampled_on_chr22_pbmm2_snv_hiphased.bam, (2)/data/genomics/homo_sapiens/genome/GRCh38_chr22.fa, and (3)/data/genomics/homo_sapiens/pacbio/vcf/SCRI_KT5028_GRCh38_downsampled_on_chr22_pbmm2_snv_hiphased.vcf.gzalone with their index files. Those were made specifically for testing thehificnvmodule and futurepb-cpg-toolsmodule. The existing test datasets do not have sufficient reads across a chromosome to runhificnv. So I included the downsized, aligned (against GRCH38), and snv-phased (hiphased) bam with 1000 reads across chr22 to testhificnvand minor allele files yielded bydeepvariantsfor this specific bam file.