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359 followers · 16 following

Achievements

Achievement: Pair Extraordinairex4Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Starstruckx3Achievement: Pull Sharkx4

Achievements

Achievement: Pair Extraordinairex4Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Starstruckx3Achievement: Pull Sharkx4

Organizations

@samtools @conda-forge @fulcrumgenomics @bioconda @nf-core @conda-incubator

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nh13/README.md

I improve human lives
by creating software
for biologists and clinicians
to accelerate breakthroughs in genomics science

  • 🔬 I’m currently working on bioinformatics methods, tools, and pipelines

  • ⚡ Fun fact: most of my software is private; keep it secret, keep it safe!

  • 📫 How to reach me: Bluesky LinkedIn Gmail Gmail

  • 🏢 See more code on GitHub or at Website

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  1. fulcrumgenomics/fgbio Public

    Tools for working with genomic and high throughput sequencing data.

    Scala 325 71

  2. fulcrumgenomics/fgpyo Public

    Quality of life improvements for Bioinformatics in Python.

    Python 28 3

  3. fulcrumgenomics/fqgrep Public

    Grep for FASTQ files

    Rust 96 4

  4. fulcrumgenomics/fqtk Public

    Fast FASTQ sample demultiplexing in Rust.

    Rust 62 2

  5. DWGSIM Public

    Whole Genome Simulator for Next-Generation Sequencing

    C 96 38

  6. conda-incubator/conda-env-builder Public

    Build and maintain multiple custom conda environments all in one place.

    Scala 37 4

2,002 contributions in the last year

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Activity overview

Contributed to fulcrumgenomics/pybwa, fulcrumgenomics/fgbio, fulcrumgenomics/fgpyo and 98 other repositories
Loading A graph representing nh13's contributions from April 14, 2024 to April 19, 2025. The contributions are 50% commits, 26% pull requests, 18% code review, 6% issues.

Contribution activity

April 2025

Created 1 repository

Created a pull request in fulcrumgenomics/fgpyo that received 6 comments

fix: always restore stderr, even with an exception

This was causing exceptions not to be printed to stderr. The following would print nothing: >>> from fgpyo.io import suppress_stderr >>> with suppr…

+6 −6 lines changed • 6 comments
6 repositories not shown

Created an issue in eza-community/eza that received 3 comments

bug: --git-ignore not working in v0.21.0

I feel like I'm missing something obvious, but alas I'll submit a report just in case: % mkdir test % cd test % git init Initialized empty Git rep…

3 comments
6 contributions in private repositories Apr 1 – Apr 14
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