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add line to check if annotation.annotation exists for the ref_align function #151

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add line to check if annotation.annotation exists for the ref_align function #151

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1 change: 1 addition & 0 deletions seqann/sequence_annotation.py
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Original file line number Diff line number Diff line change
Expand Up @@ -772,6 +772,7 @@ def ref_align(self, found_seqs, sequence: Seq=None,
##Make sure order of alignment make sense
if an.features[f].location.start == 0 \
and f != "five_prime_UTR" \
and annotation.annotation \
and 'three_prime_UTR' in annotation.annotation:
del an.features[f]
continue
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