Support H5 morphology container and individual H5 morphologies

.gitignore

@@ -10,6 +10,7 @@
 /doc/build
 /docs/build
 /docs/source/_autosummary
+/build
 .debug
 .profiling
 .vscode

bluecellulab/__init__.py

@@ -9,7 +9,7 @@
 
 from bluecellulab.importer import import_hoc
 from .verbosity import *
-from .cell import Cell, create_ball_stick  # NOQA
+from .cell import Cell, create_ball_stick, MorphIOWrapper  # NOQA
 from .circuit import EmodelProperties
 from .connection import Connection  # NOQA
 from .plotwindow import PlotWindow  # NOQA

bluecellulab/cell/__init__.py

@@ -4,3 +4,4 @@
 from .cell_dict import CellDict
 from .sonata_proxy import SonataProxy
 from .ballstick import create_ball_stick
+from .morphio_wrapper import MorphIOWrapper

bluecellulab/cell/core.py

@@ -87,7 +87,10 @@ def __init__(self,
 
         Args:
             template_path: Path to hoc template file.
-            morphology_path: Path to morphology file.
+            morphology_path: Path to morphology file. Supports .asc, .swc, .h5 and .h5 containers formats.
+                            If the morphology is in an H5 container, the path should be the
+                            path to the morphology file in the H5 container.
+                            For example: "merged-morphologies.h5/C4095O94"
             cell_id: ID of the cell, used in RNG seeds.
             record_dt: Timestep for the recordings.
             template_format: Cell template format such as 'v5' or 'v6_air_scaler'.