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allow section type of 0 (ie: unknown/undefined) in SWC #15

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allow section type of 0 (ie: unknown/undefined) in SWC #15

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2 changes: 1 addition & 1 deletion src/readers/morphologySWC.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -352,7 +352,7 @@ class SWCBuilder
throw RawDataError(err_.ERROR_SELF_PARENT(sample.id));
}

if (sample.type >= SECTION_OUT_OF_RANGE_START || sample.type <= 0) {
if (sample.type >= SECTION_OUT_OF_RANGE_START || sample.type < 0) {
details::ErrorMessages err_(path_);
throw RawDataError(
err_.ERROR_UNSUPPORTED_SECTION_TYPE(sample.lineNumber, sample.type));
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10 changes: 10 additions & 0 deletions tests/test_1_swc.py
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Original file line number Diff line number Diff line change
Expand Up @@ -660,3 +660,13 @@ def test_WarningHandlerCollector():
Morphology("", extension="swc", warning_handler=warnings1)
assert len(warnings0.get_all()) == 2
assert len(warnings1.get_all()) == 1


def test_0_defined():
contents =('''
1 1 5 2 2 3 -1
2 0 4 2 1 1 1
''')
m = Morphology(contents, "swc")
assert m.sections[0].type == morphio.SectionType.undefined

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