Uploading BlueConfig Sims

[james-isbister]

WIP changes to upload assemblies paper simulations

Most steps done for preparing the files (code could still be re-organized a bit). Files shared with Guillaume at least @MWolfR

But currently have an issue with the mapping the thalamic virtual fibre ids to the new ids using id_mapping.json

It seems the values of the fibre ids in the input spike files are in the millions (5 million +) but these ids don't exist in id_mapping.json. See error in convert_input_spikes.json

Maybe you could take a quick look @chr-pok and we can discuss?

Added: Ah, I have the suspicion that the ids in id_mapping.json have the offset of 5,000,000 and 6,000,000 removed for VPM and POm respectively?

[chr-pok]

Maybe you could take a quick look @chr-pok and we can discuss?

Could you put the converted files on OneDrive please so I can have a look?

Added: Ah, I have the suspicion that the ids in id_mapping.json have the offset of 5,000,000 and 6,000,000 removed for VPM and POm respectively?

Yes, I think all IDs in the id_mapping.json file are related to the SONATA version of the circuit where all IDs of a given node population start with 0.

[james-isbister]

Fixed the issue with the input spikes

Now missing the campaign config which I don't see using:
aws s3 ls s3://openbluebrain/staging/Simulation_data/Simulation_Campaigns/Rat/SSCx/0fab8d2c2d --no-sign-request --recursive

so I'll need to create a dummy one next

[james-isbister]

Hm, I tried downloaded a couple of other campaigns from aws open data - ones which you've already added to entitycore @chr-pok

But I don't see the campaign config.json

Any clues on how to get an example from aws, or the one for cell assemblies even?

I have some examples on my hard drive but if we can get the assemblies one that's useful

[chr-pok]

If I remember correctly, all the campaign configs on AWS are missing. Last time I got it from your old hard drive I think. But I don't know about the assemblies one, sorry. We may have it on Zenodo perhaps?

[james-isbister]

Ah ok, I'll just create one from an example on my hard drive, then. Thanks!