VariantValidator CI

Workflow runs for VariantValidator CI

• Fix frameshifts with Ter at position in the alt

  completed successfully:
  VariantValidator CI#168:Commit5841255pushedbyPeter-J-Freeman
  regex_removal

  Oct 5, 202623m 1s
  More actions for workflow run 168

• Refactor database connection handling into VariantValidator Mixin

  completed successfully:
  VariantValidator CI#167:Commit0c16f49pushedbyPeter-J-Freeman
  regex_removal

  Sep 22, 202622m 0s
  More actions for workflow run 167

• Refactor database connection handling into VariantValidator Mixin

  completed successfully:
  VariantValidator CI#166:Commit867af59pushedbyPeter-J-Freeman
  regex_removal

  Sep 22, 202622m 17s
  More actions for workflow run 166

• update a test which required VV setup ordering, now moot

  completed successfully:
  VariantValidator CI#165:Commit7ac3035pushedbyPeter-J-Freeman
  regex_removal

  Sep 22, 202621m 22s
  More actions for workflow run 165

• regression tests for mixin database config with unix sockets

  completed successfully:
  VariantValidator CI#164:Commitc2033e8pushedbyPeter-J-Freeman
  regex_removal

  Sep 21, 202622m 4s
  More actions for workflow run 164

• replace VVTA unix-socket code

  completed successfully:
  VariantValidator CI#163:Commit3a6dc8apushedbyPeter-J-Freeman
  regex_removal

  Sep 21, 202624m 27s
  More actions for workflow run 163

• Update code to use Mito translation table

  failed:
  VariantValidator CI#162:Commit380ff56pushedbyPeter-J-Freeman
  mito_gene

  Sep 21, 202622m 48s
  More actions for workflow run 162

• Add configurable db pool settings

  completed successfully:
  VariantValidator CI#161:Commit21f050epushedbyPeter-J-Freeman
  regex_removal

  Sep 20, 202622m 40s
  More actions for workflow run 161

• update image URL at the top of README

  completed successfully:
  VariantValidator CI#160:Commit79d711bpushedbyPeter-J-Freeman
  regex_removal

  Sep 2, 202622m 10s
  More actions for workflow run 160

• Support read-only VV database deployments

  completed successfully:
  VariantValidator CI#159:Commitb140f6fpushedbyPeter-J-Freeman
  regex_removal

  Aug 25, 202622m 34s
  More actions for workflow run 159

• Update final tests for Mane Select update in VVTA

  completed successfully:
  VariantValidator CI#158:Commit871d397pushedbyPeter-J-Freeman
  regex_removal

  Aug 12, 202622m 0s
  More actions for workflow run 158

• Final clean of gitignore and utils.py

  completed successfully:
  VariantValidator CI#157:Commit2950038pushedbyPeter-J-Freeman
  cpr

  Aug 11, 202622m 50s
  More actions for workflow run 157

• This commit allows mito genes (currently ensembl only) to validate as tx

  completed successfully:
  VariantValidator CI#156:Commit0d6dc8cpushedbyPeter-J-Freeman
  mito_gene

  Aug 11, 202621m 35s
  More actions for workflow run 156

• Revert "Merge branch 'regex_removal' into cpr"

  completed successfully:
  VariantValidator CI#155:Commit0f8d864pushedbyPeter-J-Freeman
  cpr

  Aug 11, 202622m 11s
  More actions for workflow run 155

• Merge branch 'regex_removal' into cpr

  completed successfully:
  VariantValidator CI#154:Commitc15196fpushedbyPeter-J-Freeman
  cpr

  Aug 11, 202623m 33s
  More actions for workflow run 154

• Final clean of gitignore and utils.py

  completed successfully:
  VariantValidator CI#153:Commit2950038pushedbyPeter-J-Freeman
  cpr

  Aug 11, 202621m 31s
  More actions for workflow run 153

• Utils files clean

  completed successfully:
  VariantValidator CI#152:Commit6186d6apushedbyPeter-J-Freeman
  cpr

  Aug 11, 202626m 16s
  More actions for workflow run 152

• Mixin file changes

  completed successfully:
  VariantValidator CI#151:Commit8274d0bpushedbyPeter-J-Freeman
  cpr

  Aug 11, 202623m 25s
  More actions for workflow run 151

• Db file cleaning

  completed successfully:
  VariantValidator CI#150:Commit5824d62pushedbyPeter-J-Freeman
  cpr

  Aug 11, 202628m 24s
  More actions for workflow run 150

• Files with minimal changes

  completed successfully:
  VariantValidator CI#149:Commit6399c73pushedbyPeter-J-Freeman
  cpr

  Aug 11, 202621m 35s
  More actions for workflow run 149

• Test files cleaned for optimal processing

  completed successfully:
  VariantValidator CI#148:Commite53f061pushedbyPeter-J-Freeman
  regex_removal

  Aug 11, 202622m 42s
  More actions for workflow run 148

• Merge pull request #880 from openvar/cache_optimisation

  completed successfully:
  VariantValidator CI#147:Commit63b121fpushedbyPeter-J-Freeman
  regex_removal

  Aug 10, 202624m 1s
  More actions for workflow run 147

• bug fix for issue #881, handle alt = None in gapped_mapping.py

  completed successfully:
  VariantValidator CI#146:Commit123aa2bpushedbyPeter-J-Freeman
  regex_removal

  Aug 10, 202629m 24s
  More actions for workflow run 146

• Update test_hdp_cache_disabled default test to 200

  completed successfully:
  VariantValidator CI#145:Commit0bda13bpushedbyPeter-J-Freeman
  cache_optimisation

  Aug 10, 202630m 50s
  More actions for workflow run 145

• Catch dup processing bug in PKD1 gene

  completed successfully:
  VariantValidator CI#143:Commit534a662pushedbyPeter-J-Freeman
  cache_optimisation

  Aug 2, 202622m 25s
  More actions for workflow run 143