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Binary file added .DS_Store
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Binary file added gtfparse/.DS_Store
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7 changes: 4 additions & 3 deletions gtfparse/read_gtf.py
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,8 @@
import logging
from os.path import exists

import polars
import polars
from polars.exceptions import ShapeError # change import path

from .attribute_parsing import expand_attribute_strings
from .parsing_error import ParsingError
Expand Down Expand Up @@ -101,13 +102,13 @@ def parse_with_polars_lazy(
separator="\t",
comment_prefix="#",
null_values=".",
dtypes=DEFAULT_COLUMN_DTYPES)
schema_overrides=DEFAULT_COLUMN_DTYPES) # parameter renamed
try:
df = polars.read_csv(
filepath_or_buffer,
new_columns=REQUIRED_COLUMNS,
**kwargs).lazy()
except polars.ShapeError:
except ShapeError: #
raise ParsingError("Wrong number of columns")

df = df.with_columns([
Expand Down
4 changes: 2 additions & 2 deletions requirements.txt
Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
polars>=0.20.2,<0.21.0
pyarrow>=14.0.2,<14.1.0
polars>=0.20.2,<=1.24.0
pyarrow>=14.0.2,<19.0.1
pandas>=2.1.0,<3.0.0
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