An open-source project dedicated to creating a virtual C. elegans nematode in a computer.
An overview of the core repositories in the project, along with the current status of automated testing, can be found here.
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion
C.elegans motor and interneurons (Nicoletti at al. 2024)
Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer
Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/