Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Investigate NeuroTune/Inspyred or BluePyOpt for parameter fitting #15

Open
gsarma opened this issue Aug 27, 2018 · 1 comment
Open

Investigate NeuroTune/Inspyred or BluePyOpt for parameter fitting #15

gsarma opened this issue Aug 27, 2018 · 1 comment
Assignees
@travs
Labels
Beginner
Milestone
Parameter Fitting

Comments

@gsarma
Copy link
Member

gsarma commented Aug 27, 2018 •
edited
Loading

There are now well-implemented frameworks for ion channel modeling that we can likely use with some modification. The primary packages to look into are NeuroTune/Inspyred and BluePyOpt/DEAP.

For a bare-bones implementation that may be useful as an introduction to using genetic algorithms for ion channel modeling, see parameter_fitting/basic_fitter.
@gsarma gsarma added this to the Parameter Fitting milestone Aug 27, 2018
@gsarma
Copy link
Member Author

gsarma commented Sep 12, 2018

@travs you might want to look at this.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@travs travs

Labels
Beginner
Projects
None yet
Milestone
Parameter Fitting
Development

No branches or pull requests
2 participants
@gsarma @travs