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    15 repositories

    • reading_czi_stack_videos_GH

      Public
      exploring czi visualization
      Jupyter Notebook
      •1•0•2•0•Updated Oct 1, 2020Oct 1, 2020

    • montium_5_TFBS_evolution

      Public
      analysis of TFBS data from montium genomes
      HTML
      •0•0•1•0•Updated Dec 30, 2019Dec 30, 2019

    • R_dummy_set

      Public
      1•0•0•0•Updated Oct 16, 2019Oct 16, 2019

    • motif_extraction

      Public
      This code extracts all nucleotide sequences in regions within an alignment file that have a called TFBS, which was calculated from map_motif_2
      Jupyter Notebook
      •1•0•0•0•Updated Sep 23, 2019Sep 23, 2019

    • map_motif2

      Public
      This code is for extracted TFBS from alignment files.
      Python
      •0•1•0•0•Updated Sep 5, 2019Sep 5, 2019

    • team_neural_network

      Public
      Neural Network of enhancer regions
      Jupyter Notebook
      •6•15•11•0•Updated Aug 23, 2019Aug 23, 2019

    • neutral_sequence_generator

      Public
      Creates a DNA sequence that has motifs distributed at a specified frequency seperated by a neutral sequence that purposefully does not contain the motifs.
      Python
      •1•0•0•0•Updated May 2, 2019May 2, 2019

    • TFBS_presence

      Public
      Asking questions about TFBS presence and enhancer function
      Jupyter Notebook
      •2•1•1•0•Updated Apr 1, 2019Apr 1, 2019

    • random_pwm_generator

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 19, 2019Mar 19, 2019

    • sampleData

      Public
      0•0•0•0•Updated Jan 25, 2019Jan 25, 2019

    • MLresources

      Public
      1•0•0•0•Updated Jul 17, 2018Jul 17, 2018

    • welcome

      Public
      Jupyter Notebook
      •8•0•0•0•Updated Jul 10, 2018Jul 10, 2018

    • making_random_regions

      Public
      3•0•0•1•Updated Jun 11, 2018Jun 11, 2018

    • map_motif

      Public
      Map frequency matrices on sequence alignments.
      Jupyter Notebook
      •5•2•9•0•Updated May 22, 2018May 22, 2018

    • QC_kvon

      Public
      R
      •0•0•0•0•Updated Mar 9, 2018Mar 9, 2018
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