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@DiscoveryDNA

Discovery DNA

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  1. team_neural_network team_neural_network Public

    Neural Network of enhancer regions

    Jupyter Notebook 14 7

  2. map_motif map_motif Public

    Map frequency matrices on sequence alignments.

    Jupyter Notebook 2 5

  3. TFBS_presence TFBS_presence Public

    Asking questions about TFBS presence and enhancer function

    Jupyter Notebook 1 2

  4. map_motif2 map_motif2 Public

    This code is for extracted TFBS from alignment files.

    Python 1

  5. welcome welcome Public

    Jupyter Notebook 8

  6. QC_kvon QC_kvon Public

    R

Repositories

Showing 10 of 15 repositories
  • reading_czi_stack_videos_GH Public

    exploring czi visualization

    Jupyter Notebook 0 1 2 0 Updated Oct 1, 2020
  • montium_5_TFBS_evolution Public

    analysis of TFBS data from montium genomes

    HTML 0 0 1 0 Updated Dec 30, 2019
  • R_dummy_set Public
    0 1 0 0 Updated Oct 16, 2019
  • motif_extraction Public Forked from ndesaraju/motif_extraction

    This code extracts all nucleotide sequences in regions within an alignment file that have a called TFBS, which was calculated from map_motif_2

    Jupyter Notebook 0 1 0 0 Updated Sep 23, 2019
  • map_motif2 Public

    This code is for extracted TFBS from alignment files.

    Python 1 0 0 0 Updated Sep 5, 2019
  • team_neural_network Public

    Neural Network of enhancer regions

    Jupyter Notebook 14 7 11 0 Updated Aug 23, 2019
  • neutral_sequence_generator Public Forked from thethomaslane/neutral_sequence_generator

    Creates a DNA sequence that has motifs distributed at a specified frequency seperated by a neutral sequence that purposefully does not contain the motifs.

    Python 0 1 0 0 Updated May 2, 2019
  • TFBS_presence Public

    Asking questions about TFBS presence and enhancer function

    Jupyter Notebook 1 2 1 0 Updated Apr 1, 2019
  • random_pwm_generator Public
    Jupyter Notebook 0 0 0 0 Updated Mar 19, 2019
  • sampleData Public
    0 0 0 0 Updated Jan 25, 2019
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