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    100 repositories

    • biostat-823

      Public
      Teaching materials for Biostat 823 course
      JavaScript
      •0•1•0•0•Updated Feb 5, 2025Feb 5, 2025

    • calrissian

      Public
      CWL on Kubernetes
      kubernetescwlcwl-workflowcwl-workflows
      Python
      •
      MIT License
      •17•47•23•2•Updated Dec 13, 2024Dec 13, 2024

    • biostat-jupyter

      Public
      Jupyter Lab container for Biostat courses
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • jupysql-utils

      Public
      Utilities module used by jupysql.
      Python
      •
      Apache License 2.0
      •9•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • jupysql

      Public
      Better SQL in Jupyter. 📊
      Python
      •
      Apache License 2.0
      •374•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • DukeDSClient

      Public
      Command line program to allow uploading, downloading, and managing projects in the duke-data-service.
      Python
      •
      MIT License
      •6•5•27•1•Updated Jun 11, 2024Jun 11, 2024

    • majoros-python-utils

      Public
      Majoros lab python modules and scripts
      Python
      •4•0•0•1•Updated May 24, 2024May 24, 2024

    • iMADS

      Public
      Web portal and supporting services that allow searching/creating TF predictions and preferences.
      JavaScript
      •
      MIT License
      •1•0•6•2•Updated Jan 31, 2024Jan 31, 2024

    • 2023-08-23-duke

      Public
      Website for the 2023 UPGG Informatics Orientation Bootcamp
      reproducible-sciencecarpentry-workshopduke-university
      HTML
      •
      Other
      •1•0•0•0•Updated Aug 26, 2023Aug 26, 2023

    • scicomp-python

      Public
      Python lesson for GCB Academy: Intro to Scientific Computing
      Jupyter Notebook
      •8•1•0•0•Updated Aug 24, 2023Aug 24, 2023

    • bespin-mailer

      Public
      Bespin mail delivery service
      Python
      •
      MIT License
      •0•0•0•1•Updated May 22, 2023May 22, 2023

    • shiny_PD

      Public
      R
      •3•0•0•0•Updated May 19, 2023May 19, 2023

    • openshift-shiny

      Public
      OpenShift compatible Docker images/config for running shiny apps
      Dockerfile
      •
      MIT License
      •3•0•0•0•Updated May 17, 2023May 17, 2023

    • D4S2

      Public
      Web service to facilitate notification and transfer of projects in DukeDS
      Python
      •
      MIT License
      •0•0•21•5•Updated Apr 17, 2023Apr 17, 2023

    • GCB-Dockerfiles

      Public
      Docker images for bioinformatic workflows that are built on Docker Hub under the DukeGCB organization.
      Python
      •
      MIT License
      •4•7•9•0•Updated Mar 16, 2023Mar 16, 2023

    • datadelivery-ui

      Public
      An ember.js application frontend for d4s2
      JavaScript
      •0•0•10•8•Updated Mar 4, 2023Mar 4, 2023

    • prospatheia

      Public
      Web-based effort reporting tool for GCB informatics
      JavaScript
      •1•0•2•2•Updated Feb 2, 2023Feb 2, 2023

    • iMADS-worker

      Public
      Worker for generating on-demand predictions using Docker and CWL in iMADS
      Python
      •
      MIT License
      •1•0•0•5•Updated Dec 8, 2022Dec 8, 2022

    • gcb-web-auth

      Public
      Django app that integrates Duke OAuth
      Python
      •
      MIT License
      •0•0•6•2•Updated Dec 8, 2022Dec 8, 2022

    • bespin-jobtoken-generator

      Public
      Python
      •0•0•0•2•Updated Dec 7, 2022Dec 7, 2022

    • bespin-ui

      Public
      An ember.js application frontend for bespin-api
      JavaScript
      •
      MIT License
      •2•2•16•28•Updated Dec 7, 2022Dec 7, 2022

    • 2022-08-15-duke

      Public
      Website for the 2022 UPGG Informatics Orientation Bootcamp
      HTML
      •
      Other
      •0•0•0•0•Updated Aug 18, 2022Aug 18, 2022

    • 2021-08-09-Duke

      Public
      Website for the 2021 UPGG Informatics Orientation Bootcamp
      educationworkshop
      HTML
      •
      Other
      •0•0•0•0•Updated Aug 15, 2022Aug 15, 2022

    • 2019-08-12-Duke

      Public
      UPGG Informatics Orientation Bootcamp 2019
      Python
      •
      Other
      •0•0•0•0•Updated Aug 15, 2022Aug 15, 2022

    • 2018-08-13-Duke

      Public
      UPGG Informatics Orientation Bootcamp 2018
      Python
      •
      Other
      •1•0•0•0•Updated Aug 15, 2022Aug 15, 2022

    • DukeDataDeliveryPipeline

      Public
      Services that deliver data stored in Azure between users
      MIT License
      •1•0•0•1•Updated Jul 19, 2022Jul 19, 2022

    • topdata

      Public
      Website that dynamically generates trackhub directories
      Python
      •
      MIT License
      •0•0•2•3•Updated Apr 22, 2022Apr 22, 2022

    • helmod

      Public
      Harvard Extensions for Lmod deployment
      Ruby
      •
      Other
      •5•0•5•0•Updated Feb 1, 2022Feb 1, 2022

    • GGR-cwl

      Public
      CWL tools and workflows for GGR
      atac-seqdnase-seqrna-seqchip-seqcwl
      Common Workflow Language
      •
      MIT License
      •17•21•0•0•Updated Oct 12, 2021Oct 12, 2021

    • gcb-ansible-roles

      Public
      Ansible roles used by GCB Ansible Playbooks
      Jinja
      •0•0•5•1•Updated Sep 9, 2021Sep 9, 2021