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@LorenFrankLab Loren Frank Lab at UCSF

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    45 repositories

    • spyglass

      Public
      Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
      pythonneuroscienceelectrophysiology
      pythonneuroscienceelectrophysiologynwbdatajointspikeinterfacekacherysortingview
      Jupyter Notebook
      •
      Other
      •60•119•112•28•Updated Sep 27, 2026Sep 27, 2026

    • rec_to_nwb_yaml_creator

      Public
      Create YAML files for rec-to-NWB Conversion
      yamlneurosciencenwb
      yamlneurosciencenwbucsfrecspyglassnwb-conversionfrank-lab
      JavaScript
      •
      MIT License
      •2•0•7•1•Updated Sep 27, 2026Sep 27, 2026

    • sorting-curations

      Public
      holds text files with manual curation tags for spike sorting with mountainsort4
      3•1•0•0•Updated Sep 26, 2026Sep 26, 2026

    • non_local_detector

      Public
      Jupyter Notebook
      •
      MIT License
      •1•3•6•3•Updated Sep 25, 2026Sep 25, 2026

    • spyglass_custom

      Public
      Spyglass-related shared materials
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2026Sep 22, 2026

    • trodes_to_nwb

      Public
      Converts data from SpikeGadgets to the NWB Data Format
      Jupyter Notebook
      •
      MIT License
      •4•3•22•23•Updated Sep 8, 2026Sep 8, 2026

    • realtime_decoder

      Public
      Python
      •3•8•4•8•Updated Sep 1, 2026Sep 1, 2026

    • fsgui

      Public
      Feedback and stimulation gui for real time experiment control
      Python
      •
      MIT License
      •3•2•0•2•Updated Aug 31, 2026Aug 31, 2026

    • comrie_et_al_2024

      Public
      Code related to Comrie et al. 2024 Hippocampal representations of alternative possibilities are flexibly generated to meet cognitive demands
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 26, 2026Aug 26, 2026

    • spyglass-store

      Public
      Data broker for Spyglass remote data store
      MIT License
      •1•0•0•1•Updated Aug 4, 2026Aug 4, 2026

    • jguides_2024

      Public
      Jen's analysis of PFC and HPc recordings in rats
      Python
      •2•0•0•0•Updated Jun 12, 2026Jun 12, 2026

    • SpatialBanditTask

      Public
      Modeling Alison's 6 arm/3 stem task
      Jupyter Notebook
      •0•2•0•0•Updated May 7, 2026May 7, 2026

    • echip_plating

      Public
      Python
      •0•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • SpyglassWorkshop2026

      Public
      Spyglass workshop materials presented at The University of Edinburgh
      Jupyter Notebook
      •
      MIT License
      •8•0•0•0•Updated Mar 5, 2026Mar 5, 2026

    • ndx-franklab-novela

      Public
      Python
      •
      Other
      •3•0•3•1•Updated Jan 16, 2026Jan 16, 2026

    • ms_stim_analysis

      Public
      Collection of notebooks and scripts to create/populate spyglass tables for analysis of ms optogenetic project
      Jupyter Notebook
      •1•6•0•1•Updated Jan 6, 2026Jan 6, 2026

    • spyglass-paper

      Public
      Code supporting Lee, Denovellis et al. (2024)
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Dec 3, 2025Dec 3, 2025

    • track_linearization

      Public
      Linearize 2D position to 1D using an HMM
      Python
      •
      MIT License
      •4•6•0•0•Updated Oct 17, 2025Oct 17, 2025

    • .github

      Public
      0•0•0•0•Updated Sep 18, 2025Sep 18, 2025

    • hhmi-spyglass-image

      Public
      Image environment to showcase HHMI/FrankLorenLab/Spyglass
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • hippocampus_content_neurofeedback

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • spyglass-demo

      Public
      One-click demo spyglass. Try it out here: https://spyglass.hhmi.2i2c.cloud/
      Jupyter Notebook
      •2•0•0•0•Updated Nov 10, 2024Nov 10, 2024

    • spyglass-export-docker

      Public
      A template for generating Dockerized implementations of Spyglass exports
      Makefile
      •
      MIT License
      •4•0•1•2•Updated Oct 24, 2024Oct 24, 2024

    • rec_to_binaries

      Public
      A python package that converts SpikeGadgets rec files in the Frank lab directory format to more useable binaries with the same directory format.
      Jupyter Notebook
      •
      MIT License
      •6•3•1•2•Updated Jul 8, 2024Jul 8, 2024

    • rec_to_nwb

      Public
      Data Migration REC -> NWB 2.0 Service
      Python
      •
      Other
      •9•1•4•0•Updated Jun 5, 2024Jun 5, 2024

    • dorsal_intermediate_analysis

      Public
      Rhino's analysis of multi-site dorsal and intermediate hippocampal recordings
      Python
      •
      MIT License
      •0•0•0•0•Updated May 24, 2024May 24, 2024

    • spykshrk_realtime

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •6•4•0•0•Updated Apr 25, 2024Apr 25, 2024

    • position_tools

      Public
      Tools for calculating smoothed 2D position, speed, head direction
      Python
      •
      MIT License
      •2•2•0•0•Updated Feb 14, 2024Feb 14, 2024

    • Gillespie_eLife_2024

      Public
      Analysis code for Gillespie et al, eLife 2024, "Neurofeedback training can modulate task-relevant memory replay rate in rats"
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jan 28, 2024Jan 28, 2024

    • franklabnwb

      Public
      Example notebook and related code to create NWB files from trodes .rec and associated files assuming franklab compatible naming system
      Jupyter Notebook
      •6•1•0•1•Updated Jan 26, 2024Jan 26, 2024
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