Repositories list

• Mangiola-Lab-Open-Positions

  Public
  This repository lists the current open positions in the Mangiola Laboratory

  0•1•0•0•Updated Feb 21, 2025Feb 21, 2025

• sccomp

  Public
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R

  compositionbayesianmicrobiome+ 9r-packagesingle-cellcytofrandom-effectsmultilevelproportionsbatch-correction+ 2

  R

  •

  GNU General Public License v3.0

  •7•99•12•3•Updated Feb 20, 2025Feb 20, 2025

• cellNexus

  Public
  Curated multi-resolution metacell universe to boost AI-model and atlas creation

  R

  •

  GNU General Public License v3.0

  •7•0•5•0•Updated Feb 19, 2025Feb 19, 2025

• cell_fundational_models

  Public
  Jupyter Notebook

  •0•0•2•0•Updated Feb 13, 2025Feb 13, 2025

• sccompPy

  Public
  Mixed-effect model to test differences in cell type proportions from single-cell data, in Python

  Python

  •

  GNU General Public License v3.0

  •1•7•1•0•Updated Jan 22, 2025Jan 22, 2025

• HPCell

  Public
  Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R

  cloudrhpc+ 4tidyversesingle-cellhpc-clustertargets-pipeline

  R

  •6•13•13•5•Updated Dec 18, 2024Dec 18, 2024

• singscoreHCA

  Public
  An R package to score signatures on the HumanCellAtlas, single-cell or pseudobulk (e.g. GSEA,singscore)

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 11, 2024Jul 11, 2024

• curatedCellAtlas

  Public
  0•0•0•0•Updated Apr 23, 2024Apr 23, 2024

• supervision

  Public
  0•0•0•0•Updated Nov 17, 2023Nov 17, 2023