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    12 repositories

    • Metagenomic-DeepFRI

      Public
      Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
      genomicsprotein-structureprotein-sequences
      genomicsprotein-structureprotein-sequencesmmseqsprotein-function-prediction
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•49•0•0•Updated Jul 20, 2026Jul 20, 2026

    • deepFRI2

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Jul 15, 2026Jul 15, 2026

    • FRIdata

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 14, 2026Jul 14, 2026

    • gutMAP

      Public
      Python
      •0•0•0•0•Updated Jun 24, 2026Jun 24, 2026

    • gut-former

      Public
      Jupyter Notebook
      •
      Other
      •0•1•0•1•Updated May 20, 2026May 20, 2026

    • 2dPointVis

      Public
      JavaScript
      •1•2•0•0•Updated Apr 30, 2026Apr 30, 2026

    • metagenomic-deepfri-project

      Public
      Repository for code associated with the metagenomic deepFRI project and publication
      Python
      •0•0•0•0•Updated Apr 27, 2026Apr 27, 2026

    • protein-structure-landscape

      Public
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •1•5•0•0•Updated Dec 19, 2025Dec 19, 2025

    • go2cog

      Public
      Mapping Gene Ontology (GO) IDs to Clusters of Orthologous Genes (COG) categories
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 12, 2025Nov 12, 2025

    • dynamo

      Public
      Jupyter Notebook
      •2•5•0•0•Updated Dec 3, 2024Dec 3, 2024

    • dynamo_library

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • viz4go

      Public
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Jul 24, 2024Jul 24, 2024
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