RNA Bioscience Initiative (RBI)

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81 repositories

antigen-exchange
Public
Analysis for antigen exchange paper
HTML
•0•0•0•0•Updated Mar 27, 2025Mar 27, 2025
aa-tRNA-seq-pipeline
Public
Snakemake pipeline to process nanopore aa-tRNA-seq data
rna-seq snakemake nanopore-sequencing
Python
•
MIT License
•1•1•14•5•Updated Mar 22, 2025Mar 22, 2025
aa-tRNA-seq-analysis-template
Public
Quarto template for aa-tRNA-seq anaysis
rna-seq-analysis quarto-template
R
•
MIT License
•0•0•0•0•Updated Mar 21, 2025Mar 21, 2025
clustifyr
Public
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
rna-seq single-cell-rna-seq clusters marker-genes assign-identities
R
•
MIT License
•15•120•0•0•Updated Mar 17, 2025Mar 17, 2025
valr
Public
Genome Interval Arithmetic in R
genome interval-arithmetic bedtools
R
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Other
•25•90•0•1•Updated Mar 16, 2025Mar 16, 2025
raer
Public
Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
rna-seq-analysis single-cell-rna-seq bioconductor-package single-cell-analysis
C
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Other
•2•8•2•0•Updated Mar 9, 2025Mar 9, 2025
nihexporter
Public
An R data package for NIH EXPORTER data
spending grants nih
R
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Other
•13•13•1•0•Updated Mar 8, 2025Mar 8, 2025
cpp11bigwig
Public
Read bigWig and bigBed files in R
C
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Other
•0•0•1•0•Updated Mar 8, 2025Mar 8, 2025
modkit
Public
A bioinformatics tool for working with modified bases
Rust
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Other
•10•0•0•0•Updated Mar 6, 2025Mar 6, 2025
aa-tRNA-seq
Public
Public-facing repo for aa-tRNA-seq pre-print
Python
•0•1•0•0•Updated Jan 27, 2025Jan 27, 2025
remora
Public
Methylation/modified base calling separated from basecalling.
Python
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Other
•22•0•0•0•Updated Jan 25, 2025Jan 25, 2025
squigualiser
Public
Visualise and analyse nanopore (ONT) raw signals
Python
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MIT License
•3•0•0•0•Updated Jan 24, 2025Jan 24, 2025
WarpDemuX
Public
direct RNA nanopore sequencing barcode design and demultiplexing
Jupyter Notebook
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Other
•3•0•0•0•Updated Jan 13, 2025Jan 13, 2025
rbitemplate
Public
RBI pkgdown template
R
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Other
•0•0•1•0•Updated Jan 12, 2025Jan 12, 2025
purrr
Public
A functional programming toolkit for R
R
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Other
•278•0•0•0•Updated Jan 11, 2025Jan 11, 2025
molb-7950
Public
MOLB 7950: Informatics and Statistics for Molecular Biology
HTML
•0•4•10•2•Updated Jan 5, 2025Jan 5, 2025
2a-peptide-search
Public
HMM models of the 2A peptide and DB search results
HTML
•0•0•2•0•Updated Jan 4, 2025Jan 4, 2025
detectrms-rs
Public
Fast detection of rna modifications sites
Rust
•0•1•1•0•Updated Dec 24, 2024Dec 24, 2024
molb-7950-data
Public
Data repository for MOLB 7950
0•0•0•0•Updated Oct 27, 2024Oct 27, 2024
scraps
Public
Single-cell RNA Processing Software
Python
•
MIT License
•4•11•4•0•Updated Oct 15, 2024Oct 15, 2024
rhumba
Public
Snakemake pipelines for RNA sequencing data
rna-seq rna-seq-analysis rna-seq-pipeline
C
•2•2•3•0•Updated Sep 1, 2024Sep 1, 2024
pneuro-onc-browsers
Public
Pediatric Neuro-oncology Cell Atlas
TeX
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MIT License
•0•0•1•0•Updated Aug 28, 2024Aug 28, 2024
lnsc-cell-browser
Public
LNSC cell browser
R
•0•0•1•0•Updated Aug 14, 2024Aug 14, 2024
tRNA004
Public
Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking
nanopore rnaseq trna nanopore-sequencing rna-modifications directrna trnaseq
Python
•1•4•1•0•Updated Jul 30, 2024Jul 30, 2024
tRNAseq-logistics
Public
Nanopore tRNA sequencing logistics (Old chemistry)
CSS
•0•0•0•0•Updated Jul 22, 2024Jul 22, 2024
gene_model_plot
Public
Python package designed to visualize gene models from GTF files and variants from VCF files.
Jupyter Notebook
•
MIT License
•0•2•0•0•Updated Jun 11, 2024Jun 11, 2024
spatialshiny
Public
Browser for Spatial Transcriptomics, built on R Shiny
R
•1•2•0•0•Updated Apr 29, 2024Apr 29, 2024
deepsort-rs
Public
sort demultiplexed reads based on deeplexicon outputs
Rust
•0•1•0•0•Updated Dec 18, 2023Dec 18, 2023
bmsc-7810-pbda
Public
BMSC 7810: Practical biological data analysis with R/RStudio
HTML
•1•1•2•0•Updated Dec 14, 2023Dec 14, 2023
fuzzyfastq-rs
Public
Rust implementation of fuzzy matching of sequences in FASTQ files
Rust
•0•1•0•0•Updated Dec 5, 2023Dec 5, 2023