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@vansteensellab Van Steensel lab git repo's

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    29 repositories

    • PARM

      Public
      PARM: Promoter Activity Regulatory Model
      Python
      •
      Other
      •5•26•4•1•Updated Jul 27, 2026Jul 27, 2026

    • CBS_Sox2_manuscript

      Public
      HTML
      •0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • primetime

      Public
      Automated pipeline for detection of TF activity from barcoded reporters
      R
      •
      Other
      •1•0•0•0•Updated Oct 28, 2025Oct 28, 2025

    • PARM_preprocessing_pipeline

      Public
      Python
      •0•3•0•0•Updated Jul 25, 2025Jul 25, 2025

    • Sox2_manuscript

      Public
      HTML
      •0•1•0•0•Updated Jun 18, 2025Jun 18, 2025

    • DSB_lamina_detachment

      Public
      0•0•0•0•Updated Jun 6, 2025Jun 6, 2025

    • EEPCombinations

      Public
      Repository to acompany Martinez-ara et al., 2023
      Python
      •1•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • CCD_repair_protein_project

      Public
      HTML
      •0•0•0•0•Updated Apr 30, 2024Apr 30, 2024

    • domainograms

      Public
      Code to plot domainograms from pA-DamID data
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 10, 2023Oct 10, 2023

    • pADamID_ABCB1_Novaseq

      Public
      This pipeline has been used to process pA-DamID samples sequenced with Novaseq platform.
      HTML
      •0•0•1•0•Updated Feb 23, 2023Feb 23, 2023

    • DSB_TRIP_protocol

      Public
      git repository to accompany Schep et al. 2022
      Python
      •1•1•0•0•Updated Jan 5, 2023Jan 5, 2023

    • tagmapAnalyseR

      Public
      tagmapAnalyseR package for transposon integration mapping (TagMap).
      R
      •
      Other
      •2•0•0•0•Updated Sep 2, 2022Sep 2, 2022

    • vanSchaik_2022_LADborders

      Public
      Repository to accompany van Schaik et al., 2022.
      HTML
      •0•1•0•0•Updated Aug 9, 2022Aug 9, 2022

    • Ki67_dynamics

      Public
      Scripts used in the dynamic genome-Ki67 interactions paper by Tom van Schaik et al
      HTML
      •0•1•0•0•Updated Jul 1, 2022Jul 1, 2022

    • EPCombinations

      Public
      Repository to accompany Martinez-Ara et al., 2022.
      HTML
      •1•0•0•0•Updated Apr 1, 2022Apr 1, 2022

    • tagmap_hopping

      Public
      pipeline for tagmentation on local transposon "hopping"
      Python
      •1•1•0•0•Updated Jan 11, 2022Jan 11, 2022

    • SuRE-SNV-code

      Public
      1•2•0•0•Updated May 17, 2021May 17, 2021

    • SuRE-variants-pipeline

      Public
      Python
      •0•0•0•0•Updated May 17, 2021May 17, 2021

    • SuRE-raQTL-scripts

      Public
      R
      •0•0•0•0•Updated May 17, 2021May 17, 2021

    • LP20191016_flySuRE_project

      Public
      HTML
      •
      Other
      •0•0•0•0•Updated May 7, 2021May 7, 2021

    • DSB_repair_TRIP

      Public
      Python
      •0•0•0•0•Updated Apr 13, 2021Apr 13, 2021

    • chip_snakemake

      Public
      Snakemake pipeline for ChIP analysis
      R
      •1•0•0•0•Updated Oct 13, 2020Oct 13, 2020

    • trip

      Public
      snakemake pipelines for TRIP analysis
      Python
      •0•0•0•0•Updated Oct 6, 2020Oct 6, 2020

    • meta_gene_plots

      Public
      R
      •0•0•0•0•Updated Oct 5, 2020Oct 5, 2020

    • Lamina_CellCycleDynamics

      Public
      Scripts from the manuscript on "Cell cycle dynamics of lamina associated DNA"
      HTML
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jun 4, 2020Jun 4, 2020

    • LAD_rewiring

      Public
      Scripts used in the LAD rewiring paper by Laura Brueckner et al
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 10, 2019Dec 10, 2019

    • DSB_Repair_Kinetics

      Public
      HTML
      •0•1•0•0•Updated Oct 21, 2019Oct 21, 2019

    • SuRE-ms-scripts

      Public
      HTML
      •0•0•0•0•Updated Oct 21, 2019Oct 21, 2019

    • Promoters_in_LADs

      Public
      HTML
      •0•2•0•0•Updated Oct 21, 2019Oct 21, 2019
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