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    • OpenMMDL

      Public
      Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes
      Python
      MIT License
      23171244Updated May 3, 2026May 3, 2026
    • mdpath

      Public
      MDPath - A tool for calculating allosteric communication pathways in proteins by analyzing the mutual information of residue dihedral angle movements throughout…
      Python
      MIT License
      82910Updated Apr 26, 2026Apr 26, 2026
    • Teaching material for an 8th-semester pharmacy course at the FU Berlin on ligand based ML in computer aided drug design, with practical examples for preparing m…
      Jupyter Notebook
      2100Updated Dec 4, 2025Dec 4, 2025
    • Data for the Polaris Antiviral Drug Discovery 2025 Challenge
      Jupyter Notebook
      0000Updated Nov 6, 2025Nov 6, 2025
    • pyrod

      Public
      PyRod - Tracing water molecules in molecular dynamics simulations
      Python
      GNU General Public License v2.0
      85861Updated Oct 31, 2025Oct 31, 2025
    • Dynamic pharmacophore modeling of molecular interactions
      Promela
      MIT License
      843111Updated Apr 26, 2024Apr 26, 2024
    • CSS
      GNU General Public License v3.0
      0300Updated Sep 14, 2023Sep 14, 2023
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