OMNI_OMICS_HUB

Scaffold setup (golem)

Prereqs:

• R 4.5.x
• golem 0.5.1 from CRAN

Initialize from the parent directory of the repo (creates the repo root as the package root): R -q -e "options(usethis.allow_nested_project = TRUE); golem::create_golem('OMNI_OMICS_HUB', open = FALSE, package_name = 'OmniOmicsHub')"

Notes:

• Package name is OmniOmicsHub; repo root is the package root (no nested folder).
• renv::init() is intentionally deferred and will be done in Story 1.6 after the project is properly set up.

Failure recovery:

• If you mistakenly created a nested folder (e.g., OMNI_OMICS_HUB/ inside the repo root), delete that folder before retrying.
• Do not delete the repo root. Remove scaffolded outputs instead:
  • R/, inst/, man/, tests/, dev/
  • DESCRIPTION, NAMESPACE, .Rbuildignore, .here, OMNI_OMICS_HUB.Rproj
  • any generated renv/ or renv.lock
• Then re-run create_golem() from the parent directory.