Skip to content
@phac-nml

National Microbiology Laboratory

Popular repositories Loading

  1. staramr staramr Public

    Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

    Python 143 28

  2. mob-suite mob-suite Public

    MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

    Python 140 32

  3. ecoli_serotyping ecoli_serotyping Public

    In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping

    Python 53 11

  4. refseq_masher refseq_masher Public

    Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

    Jupyter Notebook 41 4

  5. irida irida Public

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    Java 40 31

  6. sistr_cmd sistr_cmd Public

    SISTR (Salmonella In Silico Typing Resource) command-line tool

    Python 27 9

Repositories

Showing 10 of 154 repositories
  • arboratornf Public

    EPS suite Arborator pipeline

    phac-nml/arboratornf’s past year of commit activity
    Nextflow 0 MIT 0 4 0 Updated Apr 4, 2025
  • snvphylnfc Public

    SNVPhyl nf-core Pipeline (Development)

    phac-nml/snvphylnfc’s past year of commit activity
    Nextflow 3 MIT 1 5 0 Updated Apr 4, 2025
  • gasclustering Public
    phac-nml/gasclustering’s past year of commit activity
    Nextflow 0 MIT 0 3 0 Updated Apr 4, 2025
  • genomic_address_service Public

    Package for clustering sequences de novo and assignment to existing nomenclature

    phac-nml/genomic_address_service’s past year of commit activity
    Python 1 Apache-2.0 4 13 2 Updated Apr 4, 2025
  • pipeline-standards Public

    Guidelines for developing Nextflow pipelines for IRIDA Next.

    phac-nml/pipeline-standards’s past year of commit activity
    2 Apache-2.0 1 7 1 Updated Apr 4, 2025
  • irida-next Public

    IRIDA Next

    phac-nml/irida-next’s past year of commit activity
    Ruby 9 Apache-2.0 3 16 11 Updated Apr 4, 2025
  • locidex Public

    Common search engine for similarity based typing applications

    phac-nml/locidex’s past year of commit activity
    Python 4 MIT 0 14 0 Updated Apr 4, 2025
  • fastmatchirida Public

    Quickly refines a reference set of samples based on distance.

    phac-nml/fastmatchirida’s past year of commit activity
    Nextflow 1 MIT 0 0 1 Updated Apr 3, 2025
  • typingQC Public

    Genotyping Quality Control (typingQC)

    phac-nml/typingQC’s past year of commit activity
    Nextflow 0 MIT 0 0 1 Updated Apr 2, 2025
  • ArborView Public

    A way to visualize beautiful phylogenetic trees alongside contextual data.

    phac-nml/ArborView’s past year of commit activity
    HTML 1 0 1 1 Updated Apr 2, 2025