Issue
An upcoming upgrade of the nf-validation plugin from 1.1.3 to 2.0.0 will make breaking changes (nextflow-io/plugins#66). Right now, this pipeline uses the latest version of nf-validation and so will stop functioning when this upgrade occurs.
Solution
- Pin Nextflow plugin versions
These should be pinned to specific versions (i.e., change to nf-validation@1.1.3 and nf-iridanext@0.2.0). Pinning nf-iridanext since we might as well pin all plugin versions in this fix.
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// Nextflow plugins |
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plugins { |
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id 'nf-validation' // Validation of pipeline parameters and creation of an input channel from a sample sheet |
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id 'nf-iridanext' |
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} |
- Update version
Update version to indicate a bug fix to 1.0.1:
- Update
CHANGELOG.md to list the change. https://github.com/phac-nml/fetchdatairidanext/blob/dev/CHANGELOG.md
Issue
An upcoming upgrade of the
nf-validationplugin from 1.1.3 to 2.0.0 will make breaking changes (nextflow-io/plugins#66). Right now, this pipeline uses the latest version of nf-validation and so will stop functioning when this upgrade occurs.Solution
These should be pinned to specific versions (i.e., change to
nf-validation@1.1.3andnf-iridanext@0.2.0). Pinning nf-iridanext since we might as well pin all plugin versions in this fix.fetchdatairidanext/nextflow.config
Lines 156 to 160 in 603ee7e
Update version to indicate a bug fix to
1.0.1:fetchdatairidanext/nextflow.config
Line 201 in 603ee7e
CHANGELOG.mdto list the change. https://github.com/phac-nml/fetchdatairidanext/blob/dev/CHANGELOG.md