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Prepare for move to pharmaverse - #294

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llrs-roche merged 2 commits into
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1732_pharmaverse
Oct 28, 2026
Merged

llrs-roche merged 2 commits into
mainfrom
1732_pharmaverse

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Pull Request

Prepares the package for the move to pharmaverse.

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Code Coverage Summary

Filename                          Stmts    Miss  Cover    Missing
------------------------------  -------  ------  -------  ------------------------------------------------------------------------------
R/call_utils.R                      163     125  23.31%   19-28, 65, 67, 69, 102-345, 405
R/check_selector.R                   33       0  100.00%
R/choices_labeled.R                 157      27  82.80%   67, 73, 78, 85, 101, 218-222, 226-231, 354-355, 357, 363, 390-397
R/choices_selected.R                 81       3  96.30%   212, 218, 274
R/column_functions.R                  4       1  75.00%   19
R/data_extract_datanames.R           30       0  100.00%
R/data_extract_filter_module.R      105      47  55.24%   95-108, 110-111, 113-130, 146-165
R/data_extract_module.R             305      67  78.03%   139, 144, 161, 164-169, 171, 190-193, 223-269, 507, 512, 688, 699-700, 778-783
R/data_extract_read_module.R        137       7  94.89%   34, 39-41, 43, 138, 155
R/data_extract_select_module.R       32      18  43.75%   29-46
R/data_extract_single_module.R       60       2  96.67%   30, 43
R/data_extract_spec.R                32       0  100.00%
R/delayed_choices.R                  34       6  82.35%   86, 95-99
R/filter_spec.R                     186       1  99.46%   279
R/format_data_extract.R              16       1  93.75%   48
R/get_dplyr_call.R                  297       0  100.00%
R/get_merge_call.R                  276      29  89.49%   31-37, 48, 214-223, 387, 402-414
R/input_checks.R                     11       2  81.82%   15-16
R/merge_data_utils.R                  2       0  100.00%
R/merge_datasets.R                  137       6  95.62%   122, 254-258
R/merge_expression_module.R          60      11  81.67%   160-165, 183, 359-364
R/Queue.R                            23       0  100.00%
R/resolve_delayed.R                  16       4  75.00%   76-79
R/resolve.R                         115      45  60.87%   46, 180-286
R/select_spec.R                      64       8  87.50%   98, 178-185
R/utils.R                            37      24  35.14%   31-44, 172-185
R/zzz.R                               3       3  0.00%    2-4
TOTAL                              2416     437  81.91%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: a6e0f80

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

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github-actions Bot commented Oct 27, 2026 •

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Unit Tests Summary

  1 files   25 suites   7s ⏱️
201 tests 201 ✅ 0 💤 0 ❌
710 runs  710 ✅ 0 💤 0 ❌

Results for commit a6e0f80.

♻️ This comment has been updated with latest results.

@llrs-roche
llrs-roche merged commit 8f9fbd6 into main Oct 28, 2026
29 of 31 checks passed
@llrs-roche
llrs-roche deleted the 1732_pharmaverse branch October 28, 2026 08:21
@github-actions github-actions Bot locked and limited conversation to collaborators Oct 28, 2026
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