DeepVariant Image

images.toml

@@ -8,6 +8,7 @@ cellregmap = '0.0.3'
 cpg_hail = '0.2.134.cpg1'
 cpg_hail_gcloud = '0.2.134.cpg1'
 clinvarbitration = '1.5.1'
+deepvariant = '1.9.0'
 dragmap = '1.3.0-tokenizer-next-fix'
 echtvar = 'v0.2.1'
 exomiser = '13.3.0'

images/deepvariant/Dockerfile

@@ -0,0 +1,9 @@
+# Use official Google DeepVariant image as base
+ARG VERSION=1.9.0
+
+# Choose CPU or GPU variant
+FROM google/deepvariant:${VERSION} as deepvariant_base
+
+# Final image with DeepVariant + additional tools
+FROM deepvariant_base
+LABEL maintainer="https://github.com/google/deepvariant/issues"

images/deepvariant_pangenome_aware/Dockerfile

@@ -0,0 +1,9 @@
+# Use official Google DeepVariant image as base
+ARG VERSION=1.9.0
+
+# Choose CPU or GPU variant
+FROM google/deepvariant:pangenome_aware_deepvariant-${VERSION} as deepvariant_base
+
+# Final image with DeepVariant + additional tools
+FROM deepvariant_base
+LABEL maintainer="https://github.com/google/deepvariant/issues"