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populationgenomics / images Public

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Add new GATK image built from nightly snapshot 2026-03-01#287

Open

EddieLF wants to merge 12 commits into

mainpopulationgenomics/images:mainfrom

new_gatk_nightly_image_Dockerfilepopulationgenomics/images:new_gatk_nightly_image_DockerfileCopy head branch name to clipboard

Conversation Commits12 (12)Checks Files changed

Open

Add new GATK image built from nightly snapshot 2026-03-01#287
EddieLF wants to merge 12 commits into
mainfrom
new_gatk_nightly_image_Dockerfile

Commits

Commits on Mar 3, 2026

Add new GATK image built from nightly snapshot 2026-03-01
EddieLF
committed
rm extra file
EddieLF
committed
Add cpg-common artifact repo to FROM statement
EddieLF
committed
Build bcftools with zlib-devel not zlib1g-dev
EddieLF
committed
Revert change to zlib dev install
EddieLF
committed
Unset path variables in compiler stage
EddieLF
committed
Reset path to exclude conda
EddieLF
committed
Rewrite gcloud-sdk install command
EddieLF
committed
Use curl instead of wget for google-cloud sdk
EddieLF
committed
Refactor the whole Dockerfile with cleaned up layers and comments
EddieLF
committed
Update COPY command to copy the whole /usr/local
EddieLF
committed
Update images/gatk_nightly/Dockerfile

EddieLF
and
MattWellie
authored

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