V0.6.x#113

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joelvbernier wants to merge 307 commits intopraxes:masterfrom

joelvbernier:v0.6.x

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Commits on May 4, 2016

Merge pull request #39 from donald-e-boyce/imageseries-deb
joelvbernier
committed

Commits on Aug 16, 2016

merge of jvb master onto imageseries, with important bugfixes
Joel Bernier
committed

Commits on Sep 7, 2016

Merge branch 'imageseries'
Joel Bernier
committed

Commits on Sep 8, 2016

Update meta.yaml
joelvbernier
authored

Commits on Oct 4, 2016

Adding new scripts and a few matrix utilities.
darrencpagan
committed

Commits on Oct 10, 2016

Bug fixes in virtual difffraction scripts for outputing frame caches.
darrencpagan
committed

Commits on Oct 15, 2016

added multiprocessing to fiber generation (tested)
Joel Bernier
committed

Commits on Oct 18, 2016

Merge pull request #43 from darrencpagan/master
joelvbernier
authored

Commits on Oct 19, 2016

fixed omega-edges to expect omegas to be nframes x 2; handled case in which simulateGVecs returns empty list
Donald E. Boyce
committed
saves eta-omega maps in compressed format
Donald E. Boyce
committed

Commits on Oct 20, 2016

Commits on Oct 22, 2016

added new OmegaImageSeries class and modified config files to deliver omega-imageseries directly
Donald E. Boyce
committed

Commits on Oct 23, 2016

added imageseries processing to config file
Donald E. Boyce
committed

Commits on Oct 24, 2016

Merge pull request #46 from donald-e-boyce/joel-fork-imagefiles
joelvbernier
authored

Commits on Oct 27, 2016

corrections in refactored ReadGE.read()
Donald E. Boyce
committed

Commits on Dec 6, 2016

fixed bug in imageseries processing for dark files in config file
Donald Boyce
committed
added comment about last commit
Donald Boyce
committed

Commits on Dec 7, 2016

added default pk func kwarg
Joel Bernier
committed
fixed relative path issues in imageseries loading and metadata
Donald Boyce
committed

Commits on Dec 11, 2016

added wedge determination to omega series and fixed relative path issues in imageseries and metadata load
Donald Boyce
committed

Commits on Dec 13, 2016

Merge remote-tracking branch 'joel/master' into joel-fork-imagefiles
Donald Boyce
committed

Commits on Jan 23, 2017

added instrument module
Joel Bernier
committed
merged in v0.3.x changes, fixed whitespaces
Joel Bernier
committed
Merge branch 'master' into master
joelvbernier
authored
Merge pull request #47 from donald-e-boyce/master
joelvbernier
authored
fix branch spec in conda recipe
Joel Bernier
committed
merged master back in
Joel Bernier
committed

Commits on Jan 24, 2017

Merge pull request #48 from donald-e-boyce/joel-fork-imagefiles
joelvbernier
authored

Commits on Jan 25, 2017

Update hdf5.py
joelvbernier
authored

Commits on Jan 26, 2017

fixed shape property on processed imageseries
Donald Boyce
committed
added omega_to_frame and omega_ranges_to_frames methods
Donald Boyce
committed
added angles_in_ranges() function intended to replace validateAngleRanges()
Donald Boyce
committed

Commits on Jan 27, 2017

Fixes to image browser behavior

joelvbernier
authored and
Joel Bernier
committed
Merge branch 'master' of github.com:joelvbernier/hexrd
Joel Bernier
committed
added Dexela preprocessing files to share
Joel Bernier
committed
Merge remote-tracking branch 'joel/master' into joel-fork-imagefiles
Donald Boyce
committed
fixed frame-cache write (cache filename in yaml file); cleaned up pp_dexela
Donald Boyce
committed
added average to imageseries.stats
Joel Bernier
committed
Merge pull request #49 from donald-e-boyce/joel-fork-imagefiles
joelvbernier
authored

Commits on Jan 29, 2017

Commits on Jan 30, 2017

tweaks to imageseries for pre-processing
Joel Bernier
committed

Commits on Mar 20, 2017

Update omega.py
joelvbernier
authored

Commits on Mar 21, 2017

added pull_spots to instrument
Joel Bernier
committed
Merge branch 'master' into instrument
Joel Bernier
committed

Commits on Mar 22, 2017

added line extraction and tth range plotting opt
Joel Bernier
committed

Commits on Mar 23, 2017

default pixel buffer
Joel Bernier
committed
fixed way frame-cache writes numpy array metadata
Donald Boyce
committed
Merge branch 'instrument' of github.com:joelvbernier/hexrd into instrument
Donald Boyce
committed
Merge pull request #52 from donald-e-boyce/instrument
joelvbernier
authored

Commits on Mar 26, 2017

added rotation series simulator at panel level
Joel Bernier
committed
Merge branch 'instrument' of https://github.com/joelvbernier/hexrd into instrument
Joel Bernier
committed

Commits on Mar 28, 2017

changes related to implementing serial multipanel fit_grains
Joel Bernier
committed
sparseness check on frame-cache and casting for median
Joel Bernier
committed

Commits on Apr 1, 2017

added max-file-frames and max-total-frames to imagefiles imageseries type
Donald Boyce
committed

Commits on Apr 4, 2017

Merge pull request #53 from donald-e-boyce/instrument
joelvbernier
authored

Commits on Apr 7, 2017

changes to enable mutliwedge fitting
Joel Bernier
committed

Commits on Apr 11, 2017

added first pass at multipanel eta-omega generation
Joel Bernier
committed

Commits on Apr 13, 2017

more fixes for multipanel indexing
Joel Bernier
committed
fixed non-int index in gui
Joel Bernier
committed

Commits on Apr 14, 2017

minor fixes

joelvbernier
authored and
Joel Bernier
committed
added polygon testing to pull_spots

joelvbernier
authored and
Joel Bernier
committed

Commits on Apr 15, 2017

catch for cse of empty panel data
joelvbernier
committed

Commits on Apr 18, 2017

added HDF5 patch dump, start for including pixel size in refactored detector
Joel Bernier
committed

Commits on Apr 20, 2017

fixed omega windows in pull_spots
Joel Bernier
committed

Commits on Apr 22, 2017

more changes to frame-cache I/O
Joel Bernier
committed

Commits on Apr 29, 2017

fixes to get multipanel paintGrid working (non-numba)
Joel Bernier
committed

Commits on May 3, 2017

Merge branch 'instrument' of https://github.com/joelvbernier/hexrd into instrument
Joel Bernier
committed

Commits on May 18, 2017

fix to image looping in line position extractor method
Joel Bernier
committed
replaced dstack with tile
Joel Bernier
committed

Commits on Jun 8, 2017

framecache load munging
Joel Bernier
committed

Commits on Jun 9, 2017

added numba as build req
Joel Bernier
committed

Commits on Jun 15, 2017

Added storage of raw patch data in pull_spots
joelvbernier
authored

Commits on Jul 14, 2017

versioning fix in conda recipe
Joel Bernier
committed

Commits on Jul 21, 2017

conda-build 3.0 compatibility
joelvbernier
committed

Commits on Aug 3, 2017

another fix for conda-build 3; minor instrument tweak
Joel Bernier
committed
another fix for conda-build 3
Joel Bernier
committed
another fix for conda-build, reverting to v2 for now
Joel Bernier
committed

Commits on Sep 14, 2017

added 'nearest' interpolation mode
Joel Bernier
committed
fixed meta.yml conflict
Joel Bernier
committed
changed default tth width
joelvbernier
committed
added method for converting angles to cartesian (x,y)
joelvbernier
committed

Commits on Sep 16, 2017

Commits on Oct 13, 2017

Commits on Oct 14, 2017

Commits on Oct 16, 2017

fix to interpolation
joelvbernier
committed

Commits on Oct 31, 2017

Update meta.yaml
joelvbernier
authored

Commits on Nov 1, 2017

changes enabling refit
joelvbernier
committed

Commits on Dec 14, 2017

fix transposing of cw90 and ccw90 flip options.
joelvbernier
committed

Commits on Jan 6, 2018

add masking, fix fitting
Joel Bernier
committed

Commits on Mar 26, 2018

fixed processed imageseries dtype
Donald Boyce
committed

Commits on Mar 27, 2018

added unittests for shape & dtype in processed imageseries; disabled (skipped) unittests for frame-cache because they need to be updated
Donald Boyce
committed

Commits on Mar 28, 2018

fixed unit tests to match recent bugfix on flips
Donald Boyce
committed
added laue simulation
Joel Bernier
committed
removed lambda function
Joel Bernier
committed

Commits on Mar 30, 2018

fixes to laue simulation and beam angles calc
Joel Bernier
committed

Commits on Apr 23, 2018

change to HDF5 output
Joel Bernier
committed
remove numba hack in indexer, cleanup hdf5 output
Joel Bernier
committed

Commits on Apr 24, 2018

roi addition to PlanarDetector
Joel Bernier
committed

Commits on Apr 25, 2018

Commits on Apr 27, 2018

reconcile CAPI transforms to v0.3.x
Joel Bernier
committed

Commits on May 1, 2018

Create build.rst
joelvbernier
authored
change default buffer value
Joel Bernier
committed

Commits on May 2, 2018

Merge branch 'master' of https://github.com/joelvbernier/hexrd
Joel Bernier
committed

Commits on May 3, 2018

changes for debugging vs v0.3.x
Joel Bernier
committed

Commits on May 4, 2018

reconcile xrdutil with v0.3.x updates
Joel Bernier
committed

Commits on May 7, 2018

Pin wxpython to version 3
joelvbernier
authored
updated transforms doc
Joel Bernier
committed
Merge branch 'master' of https://github.com/joelvbernier/hexrd
Joel Bernier
committed

Commits on May 11, 2018

cleanup
Joel Bernier
committed

Commits on May 15, 2018

Merge pull request #63 from donald-e-boyce/issue-61
joelvbernier
authored

Commits on May 16, 2018

fix patch building bug

Joel Bernier
authored and
Joel Bernier
committed
indexer input casting, grain output formatting
Joel Bernier
committed
added predicted xy output, formatting cleanup
Joel Bernier
committed
spots output formatting error None
Joel Bernier
committed

Commits on May 21, 2018

added calibration params to instrument

Joel Bernier
authored and
Joel Bernier
committed

Commits on May 22, 2018

Drop default compression level to 1 and use byte shuffling for better compression ratios
seibert
committed

Commits on May 23, 2018

compression level change in HDF5 output

Joel Bernier
authored and
Joel Bernier
committed
fix to clip_to_panel, distortion bug uncovered

Joel Bernier
authored and
Joel Bernier
committed

Commits on May 26, 2018

list casting in instrument parameter output

Joel Bernier
authored and
Joel Bernier
committed
Merge branch 'master' of https://github.com/joelvbernier/hexrd

Joel Bernier
authored and
Joel Bernier
committed

Commits on Jun 8, 2018

added euler functions to rotations; recipe cleanup
Bernier
committed

Commits on Jun 14, 2018

Merge branch 'master' of https://github.com/joelvbernier/hexrd
Joel Bernier
committed
fix on omega edges in maps
Joel Bernier
committed

Commits on Jun 21, 2018

parallelize overlaps, None bug in fitting
Jun-Sang Park
committed

Commits on Jun 22, 2018

changed HDF write behavior

joelvbernier
authored and
Jun-Sang Park
committed

Commits on Jun 23, 2018

first port of NF utils
Jun-Sang Park
committed
port of grainmap from v0.3.x

joelvbernier
authored and
Jun-Sang Park
committed
more nf mods

joelvbernier
authored and
Jun-Sang Park
committed

Commits on Jun 29, 2018

cleanup of powder ring utils
Joel Bernier
committed

Commits on Jul 23, 2018

changed tilt spec to exp map

Joel Bernier
authored and
Joel Bernier
committed

Commits on Jul 31, 2018

broken kwarg bug fix
Joel Bernier
committed

Commits on Sep 6, 2018

Adding multipeak fitting to the fitting package.
Darren C. Pagan
committed

Commits on Sep 14, 2018

fixed image loading issues in nfutil and tomoutil for future scipy updated
Darren C. Pagan
committed

Commits on Sep 26, 2018

Merge pull request #67 from darrencpagan/hexrd_0526_mp
joelvbernier
authored

Commits on Oct 10, 2018

improved performance for writing frame caches and loading imagefiles
Donald Boyce
committed

Commits on Oct 11, 2018

changed tilt spec to exp map

Joel Bernier
authored and
Joel Bernier
committed
Merge branch 'new_tilt' of https://github.com/joelvbernier/hexrd into new_tilt
Joel Bernier
committed

Commits on Oct 24, 2018

Edited the extract_line_postitions routine to take a list of tth values as input.
Darren C. Pagan
committed

Commits on Oct 25, 2018

Commits on Oct 30, 2018

fix reshape for split_pvoigt in _mpeak_1d_no_bg
rachelelim
committed

Commits on Nov 1, 2018

Merge pull request #72 from rachelelim/master
joelvbernier
authored

Commits on Nov 13, 2018

fixed non-numba ValueError in distortion
Joel V. Bernier
committed

Commits on Nov 14, 2018

switch imageio to skimage.io
Joel Bernier
committed
removed imageio dep in favor of skimage
Joel Bernier
committed

Commits on Nov 30, 2018

check on data dimension
joelvbernier
committed

Commits on Jan 3, 2019

update build docs and example
joelvbernier
committed

Commits on Jan 10, 2019

Merge branch 'v0.5.x' into new_tilt
joelvbernier
committed

Commits on Jan 23, 2019

Commits on Feb 8, 2019

increase stats buffer, frame-cache updates
Joel Vincent Bernier
committed
added numba helper for frame cache write
Joel Vincent Bernier
committed
smaller dtype for index vectors
Joel Vincent Bernier
committed
cleanup on frame-cache
Joel Vincent Bernier
committed
playing with STATS_BUFFER in imageseries
Joel Vincent Bernier
committed

Commits on Feb 9, 2019

speedup to histogramming in eta-ome map generation
Joel Vincent Bernier
committed

Commits on Feb 10, 2019

more fixes to eta-ome map gen
Joel Vincent Bernier
committed

Commits on Feb 11, 2019

roi and fake planeData edits
joelvbernier
committed

Commits on Feb 27, 2019

Commits on Mar 18, 2019

improvements to peak fitting initial guess, config updates
joelvbernier
committed

Commits on Mar 20, 2019

merge in recent updates to v0.5.x
joelvbernier
committed

Commits on Apr 2, 2019

Commits on Apr 10, 2019

Update fitpeak.py
joelvbernier
authored

Commits on Apr 17, 2019

Update build.rst
joelvbernier
authored

Commits on May 7, 2019

minor bugfix for check on float image types
joelvbernier
committed

Commits on May 22, 2019

fixed rmat_s handling
joelvbernier
committed

Commits on Aug 7, 2019

DeprecationWarning fixes
Joel V. Bernier
committed

Commits on Aug 8, 2019

minor change to use capi function
Joel V. Bernier
committed

Commits on Aug 23, 2019

Commits on Sep 19, 2019

Update instrument.py
joelvbernier
authored

Commits on Sep 26, 2019

udpates for wxpython v4
joelvbernier
committed

Commits on Oct 30, 2019

Commits on Feb 19, 2020

fixes to package dependencies
joelvbernier
committed

Commits on Feb 21, 2020

added blob finding to fiber generation
Joel Vincent Bernier
committed
updates for wxpython 4 compatability
joelvbernier
committed
force 2d output
joelvbernier
committed
merge local changes
joelvbernier
committed

Commits on Mar 10, 2020

auto sizing for imageseries stats buffer
joelvbernier
committed

Commits on Mar 12, 2020

change to calibration parameter I/O
joelvbernier
committed

Commits on Mar 13, 2020

more fixes to calibration param I/O
joelvbernier
committed

Commits on Mar 19, 2020

splash screen badness
joelvbernier
committed

Commits on Mar 30, 2020

modify setup.py for pip install; wxpython 4 updates
joelvbernier
committed

Commits on Apr 11, 2020

added instr config filename to RootConfig
Joel Vincent Bernier
committed
force detector to always write sat_level and buffer
Joel Vincent Bernier
committed

Commits on Apr 14, 2020

updates to config dict behavior
joelvbernier
committed

Commits on Apr 20, 2020

fix for rings not on a particular detector
joelvbernier
committed

Commits on Apr 22, 2020

insert gridutil with correction
joelvbernier
committed

Commits on May 2, 2020

Commits on May 6, 2020

Merge pull request #77 from kenygren/v0.6.x
joelvbernier
authored

Commits on May 7, 2020

fix to eta edges
joelvbernier
committed

Commits on May 13, 2020

fixed grain ID handling with NF misorientation
rachelelim
committed
fixing my dumb mistakes of a commit
rachelelim
committed
fixed grain ID handling when reconstruction NF with misorientation
rachelelim
committed

Commits on May 14, 2020

fixed the grainID handling for no misorientation that broke when fixing handling with misorientation
rachelelim
committed

Commits on May 21, 2020

whitespace cleanup
joelvbernier
committed

Commits on May 27, 2020

Commits on May 28, 2020

Commits on Jun 1, 2020

Commits on Jun 9, 2020

fix to bilinear interpolation
joelvbernier
committed

Commits on Jun 10, 2020

Commits on Aug 12, 2020

Update README.md
joelvbernier
authored

Commits on Mar 17, 2021