Bump the python-packages group across 1 directory with 3 updates

[dependabot]

Bumps the python-packages group with 3 updates in the / directory: landlab, scikit-image and numpy.

Updates landlab from 2.7.0 to 2.8.0

Changelog

Sourced from landlab's changelog.

2.8.0 (2024-05-12)

New Components

- Added new component :class:`~.ConcentrationTrackerForDiffusion`
  for tracking hillslope sediment properties. (`[#1662](https://github.com/landlab/landlab/issues/1662) <https://github.com/landlab/landlab/issues/1662>`_)
- Added new component :class:`~.MassWastingRunout`
  for predicting the hazard extent, sediment transport and topographic change associated with the runout of a landslide. (`[#1830](https://github.com/landlab/landlab/issues/1830) <https://github.com/landlab/landlab/issues/1830>`_)
New Features

- Fixed the Radiation component by computing fields with ASCE standard formulas, added
  increased test coverage for both field computations and standard unit testing.
  Min, max, and avg daily temp are also three optional, newly added
  user-defined arguments for the component. (`[#1755](https://github.com/landlab/landlab/issues/1755) &lt;https://github.com/landlab/landlab/issues/1755&gt;`_)
- Added a new grid type, :class:`~.IcosphereGlobalGrid` (plus underlying graph
  machinery, etc.). (`[#1808](https://github.com/landlab/landlab/issues/1808) &lt;https://github.com/landlab/landlab/issues/1808&gt;`_)
- Added a new function, calc_net_face_flux_at_cell, that computes the
  net flux of a quantity into each of a RasterModelGrid's cells. This
  function uses openmp to parallelize its calculations. (`[#1900](https://github.com/landlab/landlab/issues/1900) &lt;https://github.com/landlab/landlab/issues/1900&gt;`_)
- Added a new *vtk* writer, ``landlab.io.legacy_vtk.dump`` that is
  able to write *Landlab* grids that have three spatial coordinates.
  This function is also able to write both the main grid (*nodes* and
  *patches*) as well as the dual grid (*corners* and *cells*). (`[#1932](https://github.com/landlab/landlab/issues/1932) &lt;https://github.com/landlab/landlab/issues/1932&gt;`_)
Bug Fixes

- Fixed a bug when ordering links at patches with patches composed of varying
  numbers of links. (`[#1807](https://github.com/landlab/landlab/issues/1807) &amp;lt;https://github.com/landlab/landlab/issues/1807&amp;gt;`_)
- Fixed a bug where SpaceLargeScaleEroder deviates from analytical solution for mixed bedrock-alluvial river in a portion of the parameter space. (`[#1901](https://github.com/landlab/landlab/issues/1901) &amp;lt;https://github.com/landlab/landlab/issues/1901&amp;gt;`_)
- Fixed a bug that caused a ``ModuleNotFoundError`` for *pkg_config* on
  Python 3.12. (`[#1927](https://github.com/landlab/landlab/issues/1927) &amp;lt;https://github.com/landlab/landlab/issues/1927&amp;gt;`_)


Documentation Enhancements
&lt;/code&gt;&lt;/pre&gt;
&lt;ul&gt;
&lt;li&gt;Update list of publications in USEDBY.rst. (&lt;code&gt;[#1928](https://github.com/landlab/landlab/issues/1928) &amp;lt;https://github.com/landlab/landlab/issues/1928&amp;gt;&lt;/code&gt;_)&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;Other Changes and Additions&lt;/p&gt;
&lt;pre&gt;&lt;code&gt;
- Removed the broken ``map_link_vector_to_nodes`` method from
&amp;lt;/tr&amp;gt;&amp;lt;/table&amp;gt; 
&lt;/code&gt;&lt;/pre&gt;
&lt;/blockquote&gt;
&lt;p&gt;... (truncated)&lt;/p&gt;
&lt;/details&gt;
&lt;details&gt;
&lt;summary&gt;Commits&lt;/summary&gt;

&lt;ul&gt;
&lt;li&gt;&lt;a href=&quot;https://github.com/landlab/landlab/commit/62fa4539b223b7ccefcff5c87adf7834c12265f1&quot;&gt;&lt;code&gt;62fa453&lt;/code&gt;&lt;/a&gt; Preparing release 2.8.0&lt;/li&gt;
&lt;li&gt;&lt;a href=&quot;https://github.com/landlab/landlab/commit/2f9a9cdb12eba2167f63daf081d6ce25f3b57670&quot;&gt;&lt;code&gt;2f9a9cd&lt;/code&gt;&lt;/a&gt; drop windows 32bit; update cibuildwheel&lt;/li&gt;
&lt;li&gt;&lt;a href=&quot;https://github.com/landlab/landlab/commit/2c900a3b1d8b38e73f2d90ce33e7e8c2d7720b8b&quot;&gt;&lt;code&gt;2c900a3&lt;/code&gt;&lt;/a&gt; Merge branch 'master' into mcflugen/prepare-for-v2.8&lt;/li&gt;
&lt;li&gt;&lt;a href=&quot;https://github.com/landlab/landlab/commit/26d7662a05e5f73eb0a3ab4a8afc7dd5d8c1f8df&quot;&gt;&lt;code&gt;26d7662&lt;/code&gt;&lt;/a&gt; Merge pull request &lt;a href=&quot;https://redirect.github.com/landlab/landlab/issues/1838&quot;&gt;#1838&lt;/a&gt; from landlab/gt/icosphere-grid&lt;/li&gt;
&lt;li&gt;&lt;a href=&quot;https://github.com/landlab/landlab/commit/ed4a7bb45b959004089a01096d1833149c770175&quot;&gt;&lt;code&gt;ed4a7bb&lt;/code&gt;&lt;/a&gt; add a link to the docs&lt;/li&gt;
&lt;li&gt;&lt;a href=&quot;https://github.com/landlab/landlab/commit/71d86e5f9eb45c4c8453c35b7d6eed5be1a51d2c&quot;&gt;&lt;code&gt;71d86e5&lt;/code&gt;&lt;/a&gt; make landlab.util.geometry a module&lt;/li&gt;
&lt;li&gt;&lt;a href=&quot;https://github.com/landlab/landlab/commit/13c13a40c3beb16368f0bd151a08af3e4178b200&quot;&gt;&lt;code&gt;13c13a4&lt;/code&gt;&lt;/a&gt; remove usages of to_vtk in the notebooks&lt;/li&gt;
&lt;li&gt;&lt;a href=&quot;https://github.com/landlab/landlab/commit/9bb7e7716f9fc0bc8812a524349144aed92def12&quot;&gt;&lt;code&gt;9bb7e77&lt;/code&gt;&lt;/a&gt; remove to_vtk method&lt;/li&gt;
&lt;li&gt;&lt;a href=&quot;https://github.com/landlab/landlab/commit/a3c5d72c15d97a092a46fae4d453ba4317140539&quot;&gt;&lt;code&gt;a3c5d72&lt;/code&gt;&lt;/a&gt; use landlab.io.legacy_vtk functions for vtk output&lt;/li&gt;
&lt;li&gt;&lt;a href=&quot;https://github.com/landlab/landlab/commit/9c5df3f453df5860e5cc68724986831da95f8883&quot;&gt;&lt;code&gt;9c5df3f&lt;/code&gt;&lt;/a&gt; add vtk.dump alongside to_vtk&lt;/li&gt;
&lt;li&gt;Additional commits viewable in &lt;a href=&quot;https://github.com/landlab/landlab/compare/v2.7.0...v2.8.0&quot;&gt;compare view&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;
&lt;/details&gt;

&lt;br /&gt;
</code></pre>

Updates `scikit-image` from 0.19.3 to 0.23.2
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a href="https://github.com/scikit-image/scikit-image/releases">scikit-image's releases</a>.</em></p>
<blockquote>
<h2>v0.23.2</h2>
<h1>scikit-image 0.23.2</h1>
<p>We're happy to announce the release of scikit-image 0.23.2!</p>
<h2>Bug Fixes</h2>
<ul>
<li>Make sure <code>skimage.util.img_as_ubyte</code> supports the edge case where <code>dtype('uint64').type</code> of the provided image is <code>np.ulonglong</code> instead of <code>np.uint64</code> (<a href="https://redirect.github.com/scikit-image/scikit-image/pull/7392">#7392</a>).</li>
</ul>
<h2>Documentation</h2>
<ul>
<li>Add date to 0.23.1 release notes (<a href="https://redirect.github.com/scikit-image/scikit-image/pull/7384">#7384</a>).</li>
<li>Fix docstring of <code>connectivity</code> parameter in <code>skimage.segmentation.watershed</code> (<a href="https://redirect.github.com/scikit-image/scikit-image/pull/7360">#7360</a>).</li>
</ul>
<h2>Infrastructure</h2>
<ul>
<li>Ignore Sphinx warning about unpickable cache (<a href="https://redirect.github.com/scikit-image/scikit-image/pull/7400">#7400</a>).</li>
<li>Simplify instructions on changelist in PR template (<a href="https://redirect.github.com/scikit-image/scikit-image/pull/7401">#7401</a>).</li>
</ul>
<h2>Maintenance</h2>
<ul>
<li>Use <code>numpy.inf</code> instead of deprecated <code>numpy.infty</code> (<a href="https://redirect.github.com/scikit-image/scikit-image/pull/7386">#7386</a>).</li>
<li>Update Ruff config (<a href="https://redirect.github.com/scikit-image/scikit-image/pull/7387">#7387</a>).</li>
<li>Update matrix and names of Azure pipelines configuration (<a href="https://redirect.github.com/scikit-image/scikit-image/pull/7390">#7390</a>).</li>
<li>Use upload- and download-artifact v4 (<a href="https://redirect.github.com/scikit-image/scikit-image/pull/7389">#7389</a>).</li>
<li>Ignore arch specific cast warnings originating from <code>astype</code> in tests (<a href="https://redirect.github.com/scikit-image/scikit-image/pull/7393">#7393</a>).</li>
<li>Update link to numpydoc example.py (<a href="https://redirect.github.com/scikit-image/scikit-image/pull/7395">#7395</a>).</li>
</ul>
<h2>Contributors</h2>
<p>4 authors added to this release (alphabetically):</p>
<ul>
<li><a href="https://github.com/pitkajuh"><code>@​pitkajuh</code></a></li>
<li>Jarrod Millman (<a href="https://github.com/jarrodmillman"><code>@​jarrodmillman</code></a>)</li>
<li>Lars Grüter (<a href="https://github.com/lagru"><code>@​lagru</code></a>)</li>
<li>Marianne Corvellec (<a href="https://github.com/mkcor"><code>@​mkcor</code></a>)</li>
</ul>
<p>4 reviewers added to this release (alphabetically):</p>
<ul>
<li>Egor Panfilov (<a href="https://github.com/soupault"><code>@​soupault</code></a>)</li>
<li>Jarrod Millman (<a href="https://github.com/jarrodmillman"><code>@​jarrodmillman</code></a>)</li>
<li>Lars Grüter (<a href="https://github.com/lagru"><code>@​lagru</code></a>)</li>
<li>Marianne Corvellec (<a href="https://github.com/mkcor"><code>@​mkcor</code></a>)</li>
</ul>
<p><em>These lists are automatically generated, and may not be complete or may contain duplicates.</em></p>
<h2>v0.23.2rc1</h2>
<h1>scikit-image 0.23.2rc1</h1>
<blockquote>
<p>[!IMPORTANT]</p>
</blockquote>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a href="https://github.com/scikit-image/scikit-image/commit/b76ff13478a5123e4d8b422586aaa54c791f2604"><code>b76ff13</code></a> Designate 0.23.2 release</li>
<li><a href="https://github.com/scikit-image/scikit-image/commit/b5f2ee97b744f35016aec523a06477c4bbbddca1"><code>b5f2ee9</code></a> Simplify instructions about changelist in PR template (<a href="https://redirect.github.com/scikit-image/scikit-image/issues/7401">#7401</a>)</li>
<li><a href="https://github.com/scikit-image/scikit-image/commit/3487d3a68cbd4cc4a16411701d6b7d441fc7d0ac"><code>3487d3a</code></a> Ignore sphinx warning about unpickable cache (<a href="https://redirect.github.com/scikit-image/scikit-image/issues/7400">#7400</a>)</li>
<li><a href="https://github.com/scikit-image/scikit-image/commit/c0124628df99e6b6c9d0468295a6e34a6176f62a"><code>c012462</code></a> Bump version</li>
<li><a href="https://github.com/scikit-image/scikit-image/commit/3d3e02c9e27be044c907a58790024fc54695d999"><code>3d3e02c</code></a> Designate 0.23.2rc1 release</li>
<li><a href="https://github.com/scikit-image/scikit-image/commit/7c08e3afde3bcf36154fbb96bbd25327107d6c42"><code>7c08e3a</code></a> Revert &quot;Merge pull request <a href="https://redirect.github.com/scikit-image/scikit-image/issues/7389">#7389</a> from jarrodmillman/upload-artifact-v4&quot;</li>
<li><a href="https://github.com/scikit-image/scikit-image/commit/1aa9f2156c374e51f43186b93833974f6a1827f7"><code>1aa9f21</code></a> Bump version</li>
<li><a href="https://github.com/scikit-image/scikit-image/commit/16b84480bc6d48e56011ef4864987d435c9e0455"><code>16b8448</code></a> Designate 0.23.2rc0 release</li>
<li><a href="https://github.com/scikit-image/scikit-image/commit/6b035f4904f0d3ef4d5534c2de718c177673d553"><code>6b035f4</code></a> Update link to numpydoc example.py (<a href="https://redirect.github.com/scikit-image/scikit-image/issues/7395">#7395</a>)</li>
<li><a href="https://github.com/scikit-image/scikit-image/commit/7ae4fd8833391a3fa6f28b12a53a177699518764"><code>7ae4fd8</code></a> Ignore arch specific cast warnings in tests (<a href="https://redirect.github.com/scikit-image/scikit-image/issues/7393">#7393</a>)</li>
<li>Additional commits viewable in <a href="https://github.com/scikit-image/scikit-image/compare/v0.19.3...v0.23.2">compare view</a></li>
</ul>
</details>
<br />

Updates `numpy` from 1.26.2 to 1.26.4
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a href="https://github.com/numpy/numpy/releases">numpy's releases</a>.</em></p>
<blockquote>
<h2>v1.26.4</h2>
<h1>NumPy 1.26.4 Release Notes</h1>
<p>NumPy 1.26.4 is a maintenance release that fixes bugs and regressions
discovered after the 1.26.3 release. The Python versions supported by
this release are 3.9-3.12. This is the last planned release in the
1.26.x series.</p>
<h2>Contributors</h2>
<p>A total of 13 people contributed to this release. People with a &quot;+&quot; by
their names contributed a patch for the first time.</p>
<ul>
<li>Charles Harris</li>
<li>Elliott Sales de Andrade</li>
<li>Lucas Colley +</li>
<li>Mark Ryan +</li>
<li>Matti Picus</li>
<li>Nathan Goldbaum</li>
<li>Ola x Nilsson +</li>
<li>Pieter Eendebak</li>
<li>Ralf Gommers</li>
<li>Sayed Adel</li>
<li>Sebastian Berg</li>
<li>Stefan van der Walt</li>
<li>Stefano Rivera</li>
</ul>
<h2>Pull requests merged</h2>
<p>A total of 19 pull requests were merged for this release.</p>
<ul>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25323">#25323</a>: BUG: Restore missing asstr import</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25523">#25523</a>: MAINT: prepare 1.26.x for further development</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25539">#25539</a>: BUG: <code>numpy.array_api</code>: fix <code>linalg.cholesky</code> upper decomp...</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25584">#25584</a>: CI: Bump azure pipeline timeout to 120 minutes</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25585">#25585</a>: MAINT, BLD: Fix unused inline functions warnings on clang</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25599">#25599</a>: BLD: include fix for MinGW platform detection</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25618">#25618</a>: TST: Fix test_numeric on riscv64</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25619">#25619</a>: BLD: fix building for windows ARM64</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25620">#25620</a>: MAINT: add <code>newaxis</code> to <code>__all__</code> in <code>numpy.array_api</code></li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25630">#25630</a>: BUG: Use large file fallocate on 32 bit linux platforms</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25643">#25643</a>: TST: Fix test_warning_calls on Python 3.12</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25645">#25645</a>: TST: Bump pytz to 2023.3.post1</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25658">#25658</a>: BUG: Fix AVX512 build flags on Intel Classic Compiler</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25670">#25670</a>: BLD: fix potential issue with escape sequences in <code>__config__.py</code></li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25718">#25718</a>: CI: pin cygwin python to 3.9.16-1 and fix typing tests [skip...</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25720">#25720</a>: MAINT: Bump cibuildwheel to v2.16.4</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25748">#25748</a>: BLD: unvendor meson-python on 1.26.x and upgrade to meson-python...</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25755">#25755</a>: MAINT: Include header defining backtrace</li>
<li><a href="https://redirect.github.com/numpy/numpy/pull/25756">#25756</a>: BUG: Fix np.quantile([Fraction(2,1)], 0.5) (<a href="https://redirect.github.com/numpy/numpy/issues/24711">#24711</a>)</li>
</ul>
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</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a href="https://github.com/numpy/numpy/commit/9815c16f449e12915ef35a8255329ba26dacd5c0"><code>9815c16</code></a> Merge pull request <a href="https://redirect.github.com/numpy/numpy/issues/25770">#25770</a> from charris/prepare-1.26.4</li>
<li><a href="https://github.com/numpy/numpy/commit/114ed25180c9d1f17b13b2c674d7137a931d6fbf"><code>114ed25</code></a> REL: Prepare for the NumPy 1.26.4 release</li>
<li><a href="https://github.com/numpy/numpy/commit/2fae4d38eaff7f68e90ffdc17149dfcc7573e204"><code>2fae4d3</code></a> Merge pull request <a href="https://redirect.github.com/numpy/numpy/issues/25323">#25323</a> from stefanor/import-asstr</li>
<li><a href="https://github.com/numpy/numpy/commit/ce89a0aab33c39fe05665396447cea3347f37042"><code>ce89a0a</code></a> Merge pull request <a href="https://redirect.github.com/numpy/numpy/issues/25756">#25756</a> from charris/backport-24711</li>
<li><a href="https://github.com/numpy/numpy/commit/f62dfc6c2405ccfdf859c9eabb547a59c8c835a7"><code>f62dfc6</code></a> Merge pull request <a href="https://redirect.github.com/numpy/numpy/issues/25755">#25755</a> from charris/backport-25709</li>
<li><a href="https://github.com/numpy/numpy/commit/fee88abf57bed1b30bf88242693c56604db10a1b"><code>fee88ab</code></a> BUG: Fix np.quantile([Fraction(2,1)], 0.5) (<a href="https://redirect.github.com/numpy/numpy/issues/24711">#24711</a>)</li>
<li><a href="https://github.com/numpy/numpy/commit/659be6848f65929cd101b489e3fa77f5fa740e33"><code>659be68</code></a> MAINT: Include header defining backtrace</li>
<li><a href="https://github.com/numpy/numpy/commit/837cd38270a8da4870da22ac0127b40bf0b56b43"><code>837cd38</code></a> Merge pull request <a href="https://redirect.github.com/numpy/numpy/issues/25748">#25748</a> from rgommers/unvendor-mesonpython</li>
<li><a href="https://github.com/numpy/numpy/commit/f98424077282684166d474a92d0b02df5672a3e0"><code>f984240</code></a> CI: upgrade cibuildwheel from 2.16.4 to 2.16.5 [wheel build]</li>
<li><a href="https://github.com/numpy/numpy/commit/3548f9da61bacb0deb113d5bfdee57d857cea25b"><code>3548f9d</code></a> BLD: unvendor meson-python [wheel build]</li>
<li>Additional commits viewable in <a href="https://github.com/numpy/numpy/compare/v1.26.2...v1.26.4">compare view</a></li>
</ul>
</details>
<br />


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Superseded by #256.