refactor: applying black formatting/pylint to entire repo

[JacobFastQM]

Pull Request

Description

This PR applies black formatting and fixes pylint warnings across the repo to bring it in line with our formatting standards. No functional changes are included.

Type of Change

• 🐛 Bug fix (non-breaking change which fixes an issue)
• ✨ New feature (non-breaking change which adds functionality)
• 💥 Breaking change (fix or feature that would cause existing functionality to not work as expected)
• 📚 Documentation update
• 🔧 Refactoring (no functional changes)
• ✅ Test addition/update
• 🎨 Code style/formatting update

Checklist

Code Quality

• My code follows the project's style guidelines
• I have run pre-commit hooks and all checks pass (pre-commit run --all-files)
• My commits follow the Conventional Commits format
• I have performed a self-review of my code
• My changes generate no new warnings

Testing

• no new tests required

Documentation

• I have updated the CHANGELOG.md (if applicable)
• I have checked my code and corrected any misspellings

[OziEgri]

Most of the changes look good, but there are some, which I commented on, that need further checking. Generally speaking, this is a huge PR, and I think a PR of this size should be justified with major contribution/improvements to the code, and I am afraid with pylint is not the case. I would strongly recommend reverting all those changes. What do you think @JacobFastQM

[OziEgri]

LGTM, all comments were answered