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Happy New Year! Thank you for developing DeCiFer.
I found that there are two different generatestatetrees commands and I am not sure which one is appropriate.
The one of this two commands got an error and another one worked.
Here are commands of generatestatetrees
(decifer_v2.0.4) [toby@nis test_input]$ generatestatetrees -help
Usage:
generatestatetrees [--help|-h|-help] [-S str] [-SS str] [-maxCN int]
[-maxXY int]
Where:
--help|-h|-help
Print a short help message
-S str
Input state tree file
-SS str
Output state tree file
-maxCN int
Maximum number of copy number events (default: 2)
-maxXY int
Maximum number of maternal/paternal copies (default: 2)
(decifer_v2.0.4) [toby@nis test_input]$ generatestatetrees -S CCLF-020_cn_states_unique.txt -SS CCLF-020_my_state_trees_unique.txt
Line: 4. Error: invalid copy number '1,1;2,2'
(decifer_v2.0.4) [toby@nis test_input]$ generatestatetrees CCLF-020_cn_states_unique.txt > CCLF-020_my_state_trees_unique.txt
(1,1)... Done.
(1,1) (2,0)... Done.
(1,1) (2,1)... Done.
(1,1) (2,2)... Done.
(1,1) (2,2) (5,1)... Done.
(1,1) (4,1)... Done.
Processed CCLF-020_cn_states_unique.txt...
(decifer_v2.0.4) [toby@nis test_input]$
Thank you
Toby
The text was updated successfully, but these errors were encountered:
Happy New Year! Thank you for developing DeCiFer.
I found that there are two different
generatestatetrees
commands and I am not sure which one is appropriate.The one of this two commands got an error and another one worked.
Here are commands of generatestatetrees
Thank you
Toby
The text was updated successfully, but these errors were encountered: