BlastoSeg

EMBO-DL4MIA 2024 Project

Data

Full time series of raw images: /group/dl4miacourse/projects/BlastoSeg/blastocyst_complete_dataset_256x256 (85 stacks)
Training data (raw images and corresponding ground truth):
- raw: /group/dl4miacourse/projects/BlastoSeg/blastocyst_training/Blastocyst_raw_256x256 (10 stacks)
- GT: /group/dl4miacourse/projects/BlastoSeg/blastocyst_training/Blastocyst_GT_256x256 (10 stacks)

Name		Name	Last commit message	Last commit date
Latest commit History 44 Commits
runs/UNet_diceloss		runs/UNet_diceloss
.gitignore		.gitignore
1-unet_solution.ipynb		1-unet_solution.ipynb
README.md		README.md
dataset.py		dataset.py
exploration.ipynb		exploration.ipynb
model.py		model.py
train.py		train.py
utils.py		utils.py
visualization.ipynb		visualization.ipynb