pharokka integration + chromomap scrollbar fix

• Pharokka integration 5f769a0
• UKJ cloud compatibility 81bf440
• computing resources update a0749ba
• added chromomap scrollbar 588bf21
• -stub bug when using nextflow version 24.20.4 for syntax check 87ea470

Hotfix_databases

Full Changelog: v1.2.1...v1.2.3

Database fix and sourmash version command change fix

closes 31c2416, 1d3ed88, 10026f9, d34d428, d09808c

Release v1.2.1

several readme updates (9e307db adb5c72 cdcb186 9b5ab32)

updated citation (95f3348)

fixed issue #182(f613d87)
fixed issue #183 (165bd3d) and #174 (bcf2fdb)
fixed Tab. 2 from p value to score #184 (165bd3d)

Release v1.2.0

• updated the code for Reviewer comments of Gigascience
• fixed #169 59e6021 and 6e1c50f
• default run option with tools that were benchmarked 90a0bb8
• user custom database for phage annotation via hmmscan (*.hmm) 1fa19d4

Release v1.1.0

correct release number v1.1.0 instead of v.1.1.0 #160

Release v1.1.0

• WtP generates a summary report (HTML file) #158
  • for better user interaction
  • summary report contains
    • overview (UpSet plot)
    • Phage annotations
    • CheckV output
    • Phage prediction table
    • Taxonomic phage classification
• code rework (higher modularization) #145
  • stub (fast test of channels and modules) #139

Pre-release wget_quick_fix v1.0.3

• added --no-check-certificate to wget for download_DBs

Release v1.0.2

• Bugfixes fc18d6a
  • Nextflow version not recognized properly when using Nexflow 21.07.xx solved
• cloudprofile (dev test atm, some tools not working, )
  • will be added in a future major release

Virsorter2 update from @papanikos

• split vs2 db download to separate module a29c0e6
• update all virsorter2 tasks with db 04426ed
• update virsorter2 module 6dea944
• be more explicit on dir names 3f2750a
• rename for coherence with other dbs 482aad6
• handle vs2 in the main workflow 7b5fb33
• update image tag f8b7ec0

Marvel Update from @papanikos 5efc9f6

Release v1.0.1

• added virsorter2 to local and node config, also gave virnet more cores 4d9ffa2
• closes #123

Release v1.0.0 [NEXTFLOW version 20.07.1]

• contains two new tools
  • Virsorter 2beta a9b5ee4
  • Seeker (thanks @papanikos ) 1e2be4e cd5681d
• resolved some minor issues for v1.0.0 (code readability) c690c22
• updated the Readme 420815c
  • read-the-docs documentation