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Issues list

Modify SAM spec document to better represent restrictions in the SEQ field sam

#800 opened Oct 31, 2024 by Psy-Fer

Represent U in SAM rather than T for reads from RNA sam

#801 opened Oct 31, 2024 by Psy-Fer

Somewhat unclear references to types in SAMtags sam sam-tags

#798 opened Oct 14, 2024 by cmdcolin

Redefine GQ vcf

#797 opened Oct 10, 2024 by d-cameron

VCFv4.5 gVCF example malformed bug vcf

#791 opened Sep 15, 2024 by d-cameron

LGL and LGP type incorrect bug vcf

#790 opened Sep 15, 2024 by d-cameron

MM tag preferred format for TAPS data sam sam-tags

#785 opened Aug 22, 2024 by jamesbaye

INFO/END should not be deprecated vcf

#784 opened Aug 12, 2024 by pd3

INFO CIPOS Number=2xA vcf

#783 opened Aug 10, 2024 by rkimoakbioinformatics

vcf: VCF 4.5 gVCF example has off-by-one errors vcf

#781 opened Aug 8, 2024 by zaeleus

Using ChaCha20-Poly1305 for encryption is NOT FIPS140-3 compliant and not justified and is considered unprotected plaintext crypt4gh

#780 opened Aug 7, 2024 by mmokrejs

BED "chrom" field regex is inconsistent with existing practice bed

#779 opened Jul 26, 2024 by EricR86

FORMAT field CICN and its relation to CN field vcf

#778 opened Jul 18, 2024 by vasudeva8

Number, type and description on FORMAT not in sync with List of changes vcf

#777 opened Jul 18, 2024 by vasudeva8

vcf: Invalid unstructured header line in VCF 4.3 example complexfile_passed_000.vcf vcf

#772 opened May 31, 2024 by zaeleus

refget: v2 spec for Range header errors does not align with typical usage refget

#771 opened May 29, 2024 by davidlougheed

VCF4.4 SVLEN requirement across different variant representations vcf

#769 opened May 2, 2024 by tcezard

VCF Draft 4.5 and Modified Bases vcf

#767 opened Apr 22, 2024 by cjw85 VCFv4.5 RC1

Questions about third-party use of test data

#766 opened Apr 19, 2024 by athos

CSI file is BGZF compressed but this is not mentioned in the CSV1 spec

#765 opened Apr 13, 2024 by bguo068

FAIRsharing Record Query - BED format bed

#746 opened Nov 15, 2023 by allysonlister

What does . mean for an A, R, or G indexed field? vcf

#737 opened Jul 31, 2023 by danking

Consider 64-bit values in BCF, BAM and CRAM cram sam vcf

#735 opened Jul 18, 2023 by jkbonfield

Circular chromosomes in the VCF header vcf

#733 opened Jul 5, 2023 by nh13

sam-tags: MM field value pattern does not allow ambiguity codes sam sam-tags

#732 opened Jun 27, 2023 by zaeleus

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