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  1. Pareto-UPR-Feedback-Control Pareto-UPR-Feedback-Control Public

    Python scripts used to simulate the model and calculate Pareto sets from paper "How to design an optimal sensor network for the unfolded protein response" [Mol Biol Cell 29 (2018), 3052-3062]. All …

    Python

  2. Estimation-Oscillations-Period Estimation-Oscillations-Period Public

    Matlab code for estimate statistically significant periods of oscillations in time course data [PLoS One 9 (2014), e93826]

    MATLAB

  3. Macroscopic-Simulations-Microtubule-Dynamics Macroscopic-Simulations-Microtubule-Dynamics Public

    Matlab code for "Macroscopic simulations of microtubule dynamics predict two steady-state processes governing array morphology" [Comput Biol Chem 35 (2011), 269-281]

    MATLAB

  4. Predicting-Neuroblastoma-Logic-Based-Model Predicting-Neuroblastoma-Logic-Based-Model Public

    Python code to reproduce results from the paper "Predicting neuroblastoma using developmental signals and a logic-based model" [Biophys Chem 238 (2018), 30-38]

    Python

  5. Obstacles-Impact-Diffusion-Kinetics-Enzyme-Reaction Obstacles-Impact-Diffusion-Kinetics-Enzyme-Reaction Public

    C++ code for model implemented in the paper "Unravelling the impact of obstacles in diffusion and kinetics of an enzyme catalysed reaction" [Phys Chem Chem Phys 16 (2014), 4492]

    MATLAB

  6. Lattice-Off_Lattice-Enzyme-Kinetics-Crowded-Environment Lattice-Off_Lattice-Enzyme-Kinetics-Crowded-Environment Public

    C++ code for models implemented in the paper "A systematic investigation of the rate laws valid in intracellular environments" [Biophys Chem 124 (2006) 1–10]

    C++