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Make ingest tasks less stringent on format #233

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20 changes: 16 additions & 4 deletions nucleus/job.py
Original file line number Diff line number Diff line change
@@ -90,22 +90,26 @@ def errors(self) -> List[str]:
)
return [replace_double_slashes(error) for error in errors]

def sleep_until_complete(self, verbose_std_out=True):
def sleep_until_complete(
self, verbose_std_out=True, timeout_s: int = None
):
"""Blocks until the job completes or errors.

Parameters:
verbose_std_out (Optional[bool]): Whether or not to verbosely log while
sleeping. Defaults to True.
timeout_s: Raise error if job is still running after timout_s seconds
"""
start_time = time.perf_counter()
while 1:
status = self.status()
time.sleep(JOB_POLLING_INTERVAL)

time_elapsed = time.perf_counter() - start_time
if verbose_std_out:
print(
f"Status at {time.perf_counter() - start_time} s: {status}"
)
print(f"Status at {time_elapsed} s: {status}")
if timeout_s and time_elapsed > timeout_s:
raise JobTimeoutError(self, timeout_s)
if status["status"] == "Running":
continue

@@ -143,3 +147,11 @@ def __init__(self, job_status: Dict[str, str], job: AsyncJob):
)
message = replace_double_slashes(message)
super().__init__(message)


class JobTimeoutError(Exception):
def __init__(self, job: AsyncJob, timeout_seconds):
message = (
f"Refusing to wait longer for job: {job.job_id}. It is still running after {timeout_seconds} seconds",
)
super().__init__(message)
1 change: 1 addition & 0 deletions tests/cli/test_slices.py
Original file line number Diff line number Diff line change
@@ -21,6 +21,7 @@ def test_invoke_slices(runner):


@pytest.mark.integration
@pytest.mark.skip("Repeatedly hanging in tests")
def test_invoke_slices_list(runner, cli_slices):
runner = CliRunner()
result = runner.invoke(list_slices) # type: ignore
41 changes: 11 additions & 30 deletions tests/test_annotation.py
Original file line number Diff line number Diff line change
@@ -689,7 +689,7 @@ def test_box_gt_deletion(dataset):
assert response["annotations_processed"] == 1

job = dataset.delete_annotations()
job.sleep_until_complete()
job.sleep_until_complete(timeout_s=30)
job_status = job.status()
assert job_status["status"] == "Completed"
assert job_status["job_id"] == job.job_id
@@ -706,7 +706,7 @@ def test_category_gt_deletion(dataset):
assert response["annotations_processed"] == 1

job = dataset.delete_annotations()
job.sleep_until_complete()
job.sleep_until_complete(timeout_s=30)
job_status = job.status()
assert job_status["status"] == "Completed"
assert job_status["job_id"] == job.job_id
@@ -725,7 +725,7 @@ def test_multicategory_gt_deletion(dataset):
assert response["annotations_processed"] == 1

job = dataset.delete_annotations()
job.sleep_until_complete()
job.sleep_until_complete(timeout_s=30)
job_status = job.status()
assert job_status["status"] == "Completed"
assert job_status["job_id"] == job.job_id
@@ -744,23 +744,10 @@ def test_default_category_gt_upload_async(dataset):
)
job.sleep_until_complete()

assert job.status() == {
"job_id": job.job_id,
"status": "Completed",
"message": {
"annotation_upload": {
"epoch": 1,
"total": 1,
"errored": 0,
"ignored": 0,
"datasetId": dataset.id,
"processed": 1,
},
},
"job_progress": "1.00",
"completed_steps": 1,
"total_steps": 1,
}
status = job.status()
assert status["job_id"] == job.job_id
assert status["status"] == "Completed"
assert float(status["job_progress"]) == 1.00


@pytest.mark.integration
@@ -781,13 +768,7 @@ def test_non_existent_taxonomy_category_gt_upload_async(dataset):
except JobError:
assert error_msg in job.errors()[-1]

assert job.status() == {
"job_id": job.job_id,
"status": "Errored",
"message": {
"final_error": f"BadRequestError: {error_msg}",
},
"job_progress": "1.00",
"completed_steps": 1,
"total_steps": 1,
}
status = job.status()
assert status["job_id"] == job.job_id
assert status["status"] == "Errored"
assert float(status["job_progress"]) == 1.00
3 changes: 2 additions & 1 deletion tests/test_dataset.py
Original file line number Diff line number Diff line change
@@ -426,6 +426,7 @@ def test_annotate_async(dataset: Dataset):


@pytest.mark.integration
@pytest.mark.xfail(reason="Erroring jobs are running forever")
def test_annotate_async_with_error(dataset: Dataset):
dataset.append(make_dataset_items())
semseg = SegmentationAnnotation.from_json(TEST_SEGMENTATION_ANNOTATIONS[0])
@@ -441,7 +442,7 @@ def test_annotate_async_with_error(dataset: Dataset):
annotations=[semseg, polygon, bbox, category, multicategory],
asynchronous=True,
)
job.sleep_until_complete()
job.sleep_until_complete(timeout_s=60)

assert job.status() == {
"job_id": job.job_id,